MDSvis

This is the released version of MDSvis; for the devel version, see MDSvis.

All versions

3.24 (devel), 3.23 (release)

Plots of Multi Dimensional Scaling (MDS) results

Bioconductor version: Release (3.23)

This package implements visulization of Multi Dimensional Scaling (MDS) results.

Author: Andrea Vicini [aut] ORCID: 0000-0001-9438-6909 , Philippe Hauchamps [aut, cre] ORCID: 0000-0003-2865-1852 , Shabnam Zaman [ctb] ORCID: 0000-0001-5399-0130 , Laurent Gatto [aut] ORCID: 0000-0002-1520-2268

Maintainer: Philippe Hauchamps <philippe.hauchamps at uclouvain.be>

Citation (from within R, enter citation("MDSvis")):

Andrea Vicini, Philippe Hauchamps, Laurent Gatto. MDSvis: Plots of Multi Dimensional Scaling (MDS) results. doi:10.18129/B9.bioc.MDSvis, R package version 1.0.0, https://bioconductor.org/packages/MDSvis.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MDSvis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MDSvis")

Preparing input objects from a distance matrix and sample properties	HTML	R Script
Visualization of Multi Dimensional Scaling (MDS) objects	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DimensionReduction, FlowCytometry, MultidimensionalScaling, QualityControl, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.23 (R-4.6) (< 6 months)
License	GPL-3
Depends	R (>= 4.5)
Imports	CytoMDS (>= 1.3.5), rlang, ggplot2, plotly, shiny, shinyjs, methods
System Requirements
URL	https://uclouvain-cbio.github.io/MDSvis
Bug Reports	https://github.com/UCLouvain-CBIO/MDSvis/issues

Suggests	knitr, rmarkdown, BiocStyle, HDCytoData, flowCore, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MDSvis_1.0.0.tar.gz
Windows Binary (x86_64)	MDSvis_1.0.0.zip
macOS Binary (big-sur-x86_64)	MDSvis_1.0.0.tgz
macOS Binary (sonoma-arm64)	MDSvis_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MDSvis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MDSvis
Package Short Url	https://bioconductor.org/packages/MDSvis/
Package Downloads Report	Download Stats