HubPub

Utilities to create and use Bioconductor Hubs

Bioconductor version: 3.23 · Package version: 1.20.2

Other Bioconductor versions

devel is the development version; release is the current stable one.

HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.

DOI: 10.18129/B9.bioc.HubPub

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HubPub")

Details

Maintainer	Kayla Interdonato <kayla.morrell16@gmail.com>
Author	Kayla Interdonato [aut, cre], Martin Morgan [aut], Lori Shepherd [ctb]
License	Artistic-2.0
Bug Reports	https://github.com/Bioconductor/HubPub/issues
Source branch	RELEASE_3_23
Build report	Bioconductor build system, r-universe
biocViews	DataImport, Infrastructure, Software, ThirdPartyClient
Package Short Url	https://bioconductor.org/packages/HubPub/

Citation

From within R, enter citation("HubPub"):

Kayla Interdonato, Martin Morgan. HubPub: Utilities to create and use Bioconductor Hubs. doi:10.18129/B9.bioc.HubPub, R package version 1.20.2, https://bioconductor.org/packages/HubPub.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source package	HubPub_1.20.2.tar.gz
Windows binary (x86_64)	HubPub_1.20.2.zip
macOS binary (arm64)	HubPub_1.20.2.tgz
macOS binary (x86_64)	HubPub_1.20.2.tgz

Dependencies

Imports: available, usethis, biocthis, dplyr, aws.s3, fs, BiocManager, utils

Suggests: AnnotationHubData, ExperimentHubData, GenomeInfoDbData, testthat, knitr, rmarkdown, BiocStyle

Reverse dependencies

Suggests Me (4): AnnotationHub, AnnotationHubData, ExperimentHub, ExperimentHubData