HCAData
This is the released version of HCAData; for the devel version, see HCAData.
All Bioconductor versions of HCAData
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9
Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor
Bioconductor version: 3.23 · Package version: 1.28.0
This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).
Author: Federico Marini [aut, cre] 
Maintainer: Federico Marini <marinif at uni-mainz.de>
Citation
From within R, enter citation("HCAData"):
Federico Marini. HCAData: Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor. doi:10.18129/B9.bioc.HCAData, R package version 1.28.0, https://bioconductor.org/packages/HCAData.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HCAData")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.28.0 |
| License | MIT + file LICENSE |
| URL | https://github.com/federicomarini/HCAData |
| Last updated | 2026-05-05 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7 years) |
| Downloads rank | 146 of 434 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData |
| Package Short Url | https://bioconductor.org/packages/HCAData/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | HCAData_1.28.0.tar.gz |
| Source Repository | git clone https://git.bioconductor.org/packages/HCAData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HCAData |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.6), SingleCellExperiment
Imports: ExperimentHub, AnnotationHub, HDF5Array, utils
Suggests: knitr, rmarkdown, BiocStyle, scran (>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat