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FitHiC

This is the released version of FitHiC; for the devel version, see FitHiC.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Confidence estimation for intra-chromosomal contact maps

DOI: 10.18129/B9.bioc.FitHiC

Bioconductor version: Release (3.23)

Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.

Author: Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)

Maintainer: Ruyu Tan <rut003 at ucsd.edu>

Citation (from within R, enter citation("FitHiC")):

Ferhat Ay, Timothy L. Bailey, William S. Noble, Ruyu Tan. FitHiC: Confidence estimation for intra-chromosomal contact maps. doi:10.18129/B9.bioc.FitHiC, R package version 1.38.0, https://bioconductor.org/packages/FitHiC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FitHiC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FitHiC")

Details

Package Archives

Follow Installation instructions to use this package in your R session.