FastqCleaner
This is the released version of FastqCleaner; for the devel version, see FastqCleaner.
All Bioconductor versions of FastqCleaner
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8
A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files
Bioconductor version: 3.23 · Package version: 1.30.0
An interactive web application for quality control, filtering and trimming of FASTQ files. This user-friendly tool combines a pipeline for data processing based on Biostrings and ShortRead infrastructure, with a cutting-edge visual environment. Single-Read and Paired-End files can be locally processed. Diagnostic interactive plots (CG content, per-base sequence quality, etc.) are provided for both the input and output files.
Author: Leandro Roser [aut, cre], Fernán Agüero [aut], Daniel Sánchez [aut]
Maintainer: Leandro Roser <learoser at gmail.com>
Citation
From within R, enter citation("FastqCleaner"):
Leandro Roser, Fernán Agüero, Daniel Sánchez. FastqCleaner: A Shiny Application for Quality Control, Filtering and Trimming of FASTQ Files. doi:10.18129/B9.bioc.FastqCleaner, R package version 1.30.0, https://bioconductor.org/packages/FastqCleaner.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FastqCleaner")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.30.0 |
| License | MIT + file LICENSE |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| Downloads rank | 883 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | QualityControl, SangerSeq, SequenceMatching, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/FastqCleaner/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FastqCleaner")| An Introduction to FastqCleaner | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | FastqCleaner_1.30.0.tar.gz |
| Windows binary (x86_64) | FastqCleaner_1.30.0.zip |
| macOS binary (arm64) | FastqCleaner_1.30.0.tgz |
| macOS binary (x86_64) | FastqCleaner_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/FastqCleaner |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FastqCleaner |
| Package Downloads Report | Download Stats |