FELLA

This is the released version of FELLA; for the devel version, see FELLA.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Interpretation and enrichment for metabolomics data

Bioconductor version: Release (3.23)

Enrichment of metabolomics data using KEGG entries. Given a set of affected compounds, FELLA suggests affected reactions, enzymes, modules and pathways using label propagation in a knowledge model network. The resulting subnetwork can be visualised and exported.

Author: Sergio Picart-Armada [aut, cre], Francesc Fernandez-Albert [aut], Alexandre Perera-Lluna [aut]

Maintainer: Sergio Picart-Armada <sergi.picart at upc.edu>

Citation (from within R, enter citation("FELLA")):

Sergio Picart-Armada, Francesc Fernandez-Albert, Alexandre Perera-Lluna. FELLA: Interpretation and enrichment for metabolomics data. doi:10.18129/B9.bioc.FELLA, R package version 1.32.0, https://bioconductor.org/packages/FELLA.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FELLA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("FELLA")

FELLA	PDF	R Script
Example: a fatty liver study on Mus musculus	PDF	R Script
Example: oxybenzone exposition in gilt-head bream	PDF	R Script
Quick start	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GO, GraphAndNetwork, KEGG, Metabolomics, Network, NetworkEnrichment, Pathways, Software
Version	1.32.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports	methods, igraph, Matrix, KEGGREST, plyr, stats, graphics, utils
System Requirements
URL

Suggests	shiny, DT, magrittr, visNetwork, knitr, BiocStyle, rmarkdown, testthat, biomaRt, org.Hs.eg.db, org.Mm.eg.db, AnnotationDbi, GOSemSim
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	FELLA_1.32.0.tar.gz
Windows Binary (x86_64)	FELLA_1.32.0.zip
macOS Binary (big-sur-x86_64)	FELLA_1.32.0.tgz
macOS Binary (sonoma-arm64)	FELLA_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/FELLA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/FELLA
Package Short Url	https://bioconductor.org/packages/FELLA/
Package Downloads Report	Download Stats