EatonEtAlChIPseq
This is the released version of EatonEtAlChIPseq; for the devel version, see EatonEtAlChIPseq.
ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010
Bioconductor version: Release (3.23)
ChIP-seq analysis subset from "Conserved nucleosome positioning defines replication origins" (PMID 20351051)
Author: Patrick Aboyoun <paboyoun at fhcrc.org>
Maintainer: Patrick Aboyoun <paboyoun at fhcrc.org>
citation("EatonEtAlChIPseq")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EatonEtAlChIPseq")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | ChIPSeqData, ExperimentData, GEO, Saccharomyces_cerevisiae_Data, SequencingData |
| Version | 0.50.0 |
| License | Artistic 2.0 |
| Depends | GenomicRanges(>= 1.5.42), ShortRead, rtracklayer |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EatonEtAlChIPseq_0.50.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/EatonEtAlChIPseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EatonEtAlChIPseq |
| Package Short Url | https://bioconductor.org/packages/EatonEtAlChIPseq/ |
| Package Downloads Report | Download Stats |