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DominoEffect

This is the released version of DominoEffect; for the devel version, see DominoEffect.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Identification and Annotation of Protein Hotspot Residues


Bioconductor version: Release (3.23)

The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.

Author: Marija Buljan and Peter Blattmann

Maintainer: Marija Buljan <marija.buljan.2 at gmail.com>, Peter Blattmann <peter_blattmann at bluewin.ch>

Citation (from within R, enter citation("DominoEffect")):

Marija Buljan and Peter Blattmann. DominoEffect: Identification and Annotation of Protein Hotspot Residues. doi:10.18129/B9.bioc.DominoEffect, R package version 1.32.0, https://bioconductor.org/packages/DominoEffect.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DominoEffect")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DominoEffect")
Vignette for DominoEffect package HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Alignment, Proteomics, SequenceMatching, Software, SomaticMutation
Version1.32.0
In Bioconductor sinceBioC 3.7 (R-3.5) (8.5 years)
License GPL (>= 3)
Depends R (>= 3.5)
Imports biomaRt, data.table, utils, stats, Biostrings, pwalign, SummarizedExperiment, VariantAnnotation, AnnotationDbi, Seqinfo, IRanges, GenomicRanges, methods
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DominoEffect_1.32.0.tar.gz
Windows Binary (x86_64) DominoEffect_1.32.0.zip
macOS Binary (big-sur-x86_64) DominoEffect_1.32.0.tgz
macOS Binary (sonoma-arm64) DominoEffect_1.32.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/DominoEffect
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/DominoEffect
Package Short Url https://bioconductor.org/packages/DominoEffect/
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