DEGseq
This is the released version of DEGseq; for the devel version, see DEGseq.
All Bioconductor versions of DEGseq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Identify Differentially Expressed Genes from RNA-seq data
Bioconductor version: 3.23 · Package version: 1.66.0
DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.
Author: Likun Wang <wanglk at pku.edu.cn>, Xiaowo Wang <xwwang at tsinghua.edu.cn> and Xuegong Zhang <zhangxg at tsinghua.edu.cn>.
Maintainer: Likun Wang <wanglk at pku.edu.cn>
Citation
From within R, enter citation("DEGseq"):
Likun Wang, Xiaowo Wang and Xuegong Zhang. DEGseq: Identify Differentially Expressed Genes from RNA-seq data. doi:10.18129/B9.bioc.DEGseq, R package version 1.66.0, https://bioconductor.org/packages/DEGseq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DEGseq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.66.0 |
| License | LGPL (>=2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 578 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software |
| Package Short Url | https://bioconductor.org/packages/DEGseq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DEGseq")| DEGseq | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | DEGseq_1.66.0.tar.gz |
| Windows binary (x86_64) | DEGseq_1.66.0.zip |
| macOS binary (arm64) | DEGseq_1.66.0.tgz |
| macOS binary (x86_64) | DEGseq_1.66.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DEGseq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DEGseq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.8.0), qvalue, methods
Imports: graphics, grDevices, methods, stats, utils