BioImageDbs
This is the released version of BioImageDbs; for the devel version, see BioImageDbs.
All Bioconductor versions of BioImageDbs
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13
Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)
Bioconductor version: 3.23 · Package version: 1.20.0
The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.
Author: Satoshi Kume [aut, cre] 
, Kozo Nishida [aut]
Maintainer: Satoshi Kume <satoshi.kume.1984 at gmail.com>
Citation
From within R, enter citation("BioImageDbs"):
Satoshi Kume, Kozo Nishida. BioImageDbs: Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub). doi:10.18129/B9.bioc.BioImageDbs, R package version 1.20.0, https://bioconductor.org/packages/BioImageDbs.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BioImageDbs")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.20.0 |
| License | Artistic-2.0 |
| URL | https://kumes.github.io/BioImageDbs/ |
| Last updated | 2026-05-05 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5 years) |
| Downloads rank | 303 of 434 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellCulture, ExperimentData, ExperimentHub, Tissue |
| Package Short Url | https://bioconductor.org/packages/BioImageDbs/ |
Documentation
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BioImageDbs_1.20.0.tar.gz |
| Source Repository | git clone https://git.bioconductor.org/packages/BioImageDbs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioImageDbs |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.1.0)
Imports: ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum