BUScorrect
This is the released version of BUScorrect; for the devel version, see BUScorrect.
All Bioconductor versions of BUScorrect
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8
Batch Effects Correction with Unknown Subtypes
Bioconductor version: 3.23 · Package version: 1.30.0
High-throughput experimental data are accumulating exponentially in public databases. However, mining valid scientific discoveries from these abundant resources is hampered by technical artifacts and inherent biological heterogeneity. The former are usually termed "batch effects," and the latter is often modelled by "subtypes." The R package BUScorrect fits a Bayesian hierarchical model, the Batch-effects-correction-with-Unknown-Subtypes model (BUS), to correct batch effects in the presence of unknown subtypes. BUS is capable of (a) correcting batch effects explicitly, (b) grouping samples that share similar characteristics into subtypes, (c) identifying features that distinguish subtypes, and (d) enjoying a linear-order computation complexity.
Author: Xiangyu Luo <xyluo1991 at gmail.com>, Yingying Wei <yweicuhk at gmail.com>
Maintainer: Xiangyu Luo <xyluo1991 at gmail.com>
Citation
From within R, enter citation("BUScorrect"):
Xiangyu Luo, Yingying Wei. BUScorrect: Batch Effects Correction with Unknown Subtypes. doi:10.18129/B9.bioc.BUScorrect, R package version 1.30.0, https://bioconductor.org/packages/BUScorrect.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BUScorrect")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.30.0 |
| License | GPL (>= 2) |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| Downloads rank | 1170 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | BatchEffect, Bayesian, Clustering, FeatureExtraction, GeneExpression, Software, StatisticalMethod |
| Package Short Url | https://bioconductor.org/packages/BUScorrect/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BUScorrect")| BUScorrect_user_guide | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | BUScorrect_1.30.0.tar.gz |
| Windows binary (x86_64) | BUScorrect_1.30.0.zip |
| macOS binary (arm64) | BUScorrect_1.30.0.tgz |
| macOS binary (x86_64) | BUScorrect_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BUScorrect |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BUScorrect |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0)
Imports: gplots, methods, grDevices, stats, SummarizedExperiment
Suggests: BiocStyle, knitr, RUnit, BiocGenerics