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Anaquin

Statistical analysis of sequins

Bioconductor version: 3.23 · Package version: 2.36.0

Other Bioconductor versions

devel is the development version; release is the current stable one.

3.24 (devel), 3.23 (release)

The project is intended to support the use of sequins (synthetic sequencing spike-in controls) owned and made available by the Garvan Institute of Medical Research. The goal is to provide a standard open source library for quantitative analysis, modelling and visualization of spike-in controls.

DOI: 10.18129/B9.bioc.Anaquin

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Anaquin")

Details

MaintainerTed Wong <t.wong@garvan.org.au>
AuthorTed Wong
LicenseBSD_3_clause + file LICENSE
URLwww.sequin.xyz
Bug Reportshttps://github.com/student-t/RAnaquin/issues
Source branchRELEASE_3_23
Build report Bioconductor build system, r-universe
biocViewsDifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Package Short Url https://bioconductor.org/packages/Anaquin/

Citation

From within R, enter citation("Anaquin"):

Ted Wong. Anaquin: Statistical analysis of sequins. doi:10.18129/B9.bioc.Anaquin, R package version 2.36.0, https://bioconductor.org/packages/Anaquin.

Generated from the package metadata; it may differ from the package's own citation.

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageAnaquin_2.36.0.tar.gz
Windows binary (x86_64)Anaquin_2.36.0.zip
macOS binary (arm64)Anaquin_2.36.0.tgz
macOS binary (x86_64)Anaquin_2.36.0.tgz
Dependencies

Depends: R (>= 3.3), ggplot2 (>= 2.2.0)

Imports: ggplot2, ROCR, knitr, qvalue, locfit, methods, stats, utils, plyr, DESeq2

Suggests: RUnit, rmarkdown