AnVILPublish

This is the released version of AnVILPublish; for the devel version, see AnVILPublish.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Publish Packages and Other Resources to AnVIL Workspaces

Bioconductor version: Release (3.23)

Use this package to create or update AnVIL workspaces from resources such as R / Bioconductor packages. The metadata about the package (e.g., select information from the package DESCRIPTION file and from vignette YAML headings) are used to populate the 'DASHBOARD'. Vignettes are translated to python notebooks ready for evaluation in AnVIL.

Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Martin Morgan [aut] ORCID: 0000-0002-5874-8148 , Kayla Interdonato [aut], Vincent Carey [ctb] ORCID: 0000-0003-4046-0063

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("AnVILPublish")):

Marcel Ramos, Martin Morgan, Kayla Interdonato. AnVILPublish: Publish Packages and Other Resources to AnVIL Workspaces. doi:10.18129/B9.bioc.AnVILPublish, R package version 1.22.0, https://bioconductor.org/packages/AnVILPublish.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILPublish")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILPublish")

Publishing R / Bioconductor packages to AnVIL Workspaces	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.22.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	Artistic-2.0
Depends
Imports	AnVIL, AnVILGCP, BiocBaseUtils, BiocManager, httr, jsonlite, rmarkdown, yaml, readr, whisker, tools, utils, stats
System Requirements
URL

Suggests	knitr, BiocStyle, GCPtools, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me	BiocAzul
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnVILPublish_1.22.0.tar.gz
Windows Binary (x86_64)	AnVILPublish_1.22.0.zip
macOS Binary (big-sur-x86_64)	AnVILPublish_1.22.0.tgz
macOS Binary (sonoma-arm64)	AnVILPublish_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnVILPublish
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnVILPublish
Package Short Url	https://bioconductor.org/packages/AnVILPublish/
Package Downloads Report	Download Stats