ACE
This is the released version of ACE; for the devel version, see ACE.
All Bioconductor versions of ACE
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
Bioconductor version: 3.23 · Package version: 1.30.0
Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.
Author: Jos B Poell
Maintainer: Jos B Poell <j.poell at amsterdamumc.nl>
DOI: 10.18129/B9.bioc.ACE
Citation
From within R, enter citation("ACE"):
Jos B Poell. ACE: Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing. doi:10.18129/B9.bioc.ACE, R package version 1.30.0, https://bioconductor.org/packages/ACE.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ACE")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.30.0 |
| License | GPL-2 |
| URL | https://github.com/tgac-vumc/ACE |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| Downloads rank | 1101 of 2,418 |
| Source branch | RELEASE_3_23 |
| Build report | Bioconductor build system, r-universe |
| biocViews | CopyNumberVariation, Coverage, DNASeq, Sequencing, Software, Visualization, WholeGenome |
| Package Short Url | https://bioconductor.org/packages/ACE/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ACE")| ACE vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ACE_1.30.0.tar.gz |
| Windows binary (x86_64) | ACE_1.30.0.zip |
| macOS binary (arm64) | ACE_1.30.0.tgz |
| macOS binary (x86_64) | ACE_1.30.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ACE |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ACE |
| Package Downloads Report | Download Stats |