Summer Bioinformatics Course, Ribeirao Preto, Brazil, January / February 2014

Ribeirao Preto, Sao Paulo, Brazil

2014-01-27 ~ 2014-02-07

Instructors

• Martin Morgan
• Herve Pages

Description

R / Bioconductor material for portions of a course on the analysis and comprehension of high-throughput sequence data. Additional material available from the course web site and other course instructors.

Materials

Download and install the package (containing all material) for use with R-3.0.2 / Bioconductor 2.13.

• SummerX_0.99.0.tar.gz

Install the package with

install.packages("SummerX_0.99.0.tar.gz", repos=NULL)

Alternatively, explore the material through the following documents:

• Bioconductor-slides pdf, R, Rnw
• Annotation-exercises pdf, R, Rnw
• Annotation-slides pdf, R, Rnw
• Ranges-exercises pdf, R, Rnw
• Ranges-slides pdf, R, Rnw
• ReadCounting-exercises pdf, R, Rnw
• Variants-exercises pdf, R, Rnw
• Variants-slides.pdf, Rnw
• Visualization-slides pdf, R, Rnw
• BestPractices-slides pdf, Rnw

Supporting material:

• abc.csv, BRFSS-subset.csv, E-MTAB-1147-toptable.csv, shiny-exercise.tar.gz, GRangesUtilities.tar.gz