Afternoon Practicals

Differential expression analysis of microarray experiments

Analysis of Illumina Data: The lumi package and the nuID naming scheme for oligonucleotides

Efficient manipulation of large biological sequences with the Biostrings package

Gaggle: broadcast data from R to interactive programs & websites

Distributed R and Bioconductor for the Web

Analysing Illumina bead-based data using beadarray

Flow Cytometry Analysis with R: the flowCore package

Integrating Bioconductor Packages in the Analysis of Affymetrix Data

Microarray data quality metrics

Analysis of small to very large Affymetrix data sets

Database mining with biomaRt

Analysis of Affymetrix and Nimblegen data and extension of BioConductor tools using the oligo package

Machine learning for high-throughput biology

Image processing and analysis with EBImage (applied to cytomicroscopy)

Exposing Bioconductor functionality as web services