beadarraySNP

Normalization and reporting of Illumina SNP bead arrays

Bioconductor version: Release (2.14)

Importing data from Illumina SNP experiments and performing copy number calculations and reports.

Author: Jan Oosting

Maintainer: Jan Oosting <j.oosting at lumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("beadarraySNP")

To cite this package in a publication, start R and enter:

    citation("beadarraySNP")

Documentation

PDF R Script beadarraySNP.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariation, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel
Version 1.30.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL-2
Depends methods, Biobase(>= 2.5.5), quantsmooth
Imports
Suggests aCGH, affy, limma, snapCGH, beadarray, DNAcopy
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source beadarraySNP_1.30.0.tar.gz
Windows Binary beadarraySNP_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) beadarraySNP_1.30.0.tgz
Mac OS X 10.9 (Mavericks)
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