quantsmooth

Quantile smoothing and genomic visualization of array data

Bioconductor version: Release (2.14)

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("quantsmooth")

To cite this package in a publication, start R and enter:

    citation("quantsmooth")

Documentation

PDF R Script quantsmooth
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Software, Visualization
Version 1.30.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL-2
Depends R (>= 2.10.0), quantreg, grid
Imports
Suggests
System Requirements
URL
Depends On Me beadarraySNP
Imports Me GWASTools, SIM
Suggests Me PREDA

Package Downloads

Package Source quantsmooth_1.30.0.tar.gz
Windows Binary quantsmooth_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) quantsmooth_1.30.0.tgz
Mac OS X 10.9 (Mavericks)
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