To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("quantsmooth")

In most cases, you don't need to download the package archive at all.

quantsmooth

Quantile smoothing and genomic visualization of array data

Bioconductor version: Release (3.0)

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Citation (from within R, enter citation("quantsmooth")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("quantsmooth")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")

 

PDF R Script quantsmooth
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL-2
Depends R (>= 2.10.0), quantreg, grid
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me beadarraySNP
Imports Me GWASTools, SIM
Suggests Me PREDA
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source quantsmooth_1.32.0.tar.gz
Windows Binary quantsmooth_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) quantsmooth_1.32.0.tgz
Mac OS X 10.9 (Mavericks) quantsmooth_1.32.0.tgz
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