HubPub

DOI: 10.18129/B9.bioc.HubPub    

Utilities to create and use Bioconductor Hubs

Bioconductor version: Release (3.14)

HubPub provides users with functionality to help with the Bioconductor Hub structures. The package provides the ability to create a skeleton of a Hub style package that the user can then populate with the necessary information. There are also functions to help add resources to the Hub package metadata files as well as publish data to the Bioconductor S3 bucket.

Author: Kayla Interdonato [aut, cre], Martin Morgan [aut]

Maintainer: Kayla Interdonato <kayla.morrell at roswellpark.org>

Citation (from within R, enter citation("HubPub")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HubPub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HubPub")

 

HTML R Script Creating A Hub Package: ExperimentHub or AnnotationHub
HTML R Script HubPub: Help with publication of Hub packages
PDF   Reference Manual
Text   NEWS

Details

biocViews DataImport, Infrastructure, Software, ThirdPartyClient
Version 1.2.0
In Bioconductor since BioC 3.13 (R-4.1) (< 6 months)
License Artistic-2.0
Depends
Imports available, usethis, biocthis, dplyr, aws.s3, fs, BiocManager, utils
LinkingTo
Suggests AnnotationHubData, ExperimentHubData, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
BugReports https://github.com/Bioconductor/HubPub/issues
Depends On Me
Imports Me
Suggests Me AnnotationHub, AnnotationHubData, ExperimentHub, ExperimentHubData
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HubPub_1.2.0.tar.gz
Windows Binary HubPub_1.2.0.zip
macOS 10.13 (High Sierra) HubPub_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HubPub
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HubPub
Package Short Url https://bioconductor.org/packages/HubPub/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.14 Source Archive

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: