DOI: 10.18129/B9.bioc.HTSeqGenie    

A NGS analysis pipeline.

Bioconductor version: Release (3.8)

Libraries to perform NGS analysis.

Author: Gregoire Pau, Jens Reeder

Maintainer: Jens Reeder <reeder.jens at>

Citation (from within R, enter citation("HTSeqGenie")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("HTSeqGenie", version = "3.8")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script HTSeqGenie
PDF   Reference Manual
Text   NEWS


biocViews Software
Version 4.12.0
In Bioconductor since BioC 2.11 (R-2.15) (6.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), gmapR(>= 1.8.0), ShortRead(>= 1.19.13), VariantAnnotation(>= 1.8.3)
Imports BiocGenerics(>= 0.2.0), S4Vectors(>= 0.9.25), IRanges(>= 1.21.39), GenomicRanges(>= 1.23.21), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.6.1), hwriter (>= 1.3.0), Cairo (>= 1.5.5), GenomicFeatures(>= 1.9.31), BiocParallel, parallel, tools, rtracklayer(>= 1.17.19), GenomicAlignments, VariantTools(>= 1.7.7), GenomeInfoDb, SummarizedExperiment, methods
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene, LungCancerLines,
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Follow Installation instructions to use this package in your R session.

Source Package HTSeqGenie_4.12.0.tar.gz
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Mac OS X 10.11 (El Capitan)
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