To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("consensusOV")

In most cases, you don't need to download the package archive at all.

consensusOV

DOI: 10.18129/B9.bioc.consensusOV    

This is the development version of consensusOV; to use it, please install the devel version of Bioconductor.

Gene expression-based subtype classification for high-grade serous ovarian cancer

Bioconductor version: Development (3.6)

This package implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer as described by Helland et al. (PLoS One, 2011), Bentink et al. (PLoS One, 2012), Verhaak et al. (J Clin Invest, 2013), and Konecny et al. (J Natl Cancer Inst, 2014). In addition, the package implements a consensus classifier, which consolidates and improves on the robustness of the proposed subtype classifiers, thereby providing reliable stratification of patients with HGS ovarian tumors of clearly defined subtype.

Author: Gregory M Chen, Lavanya Kannan, Ludwig Geistlinger, Victor Kofia, Levi Waldron, Benjamin Haibe-Kains

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("consensusOV")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("consensusOV")

Documentation

HTML R Script Molecular subtyping for ovarian cancer
PDF   Reference Manual

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Microarray, Software, Transcriptomics
Version 0.99.3
In Bioconductor since BioC 3.6 (R-3.4)
License Artistic-2.0
Depends R (>= 3.4)
Imports Biobase, GSVA, gdata, genefu, limma, matrixStats, randomForest, stats, utils
LinkingTo
Suggests knitr, ggplot2
SystemRequirements
Enhances
URL http://www.pmgenomics.ca/bhklab/software/consensusOV
BugReports https://github.com/bhklab/consensusOV/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source consensusOV_0.99.3.tar.gz
Windows Binary consensusOV_0.99.3.zip
Mac OS X 10.11 (El Capitan) consensusOV_0.99.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/consensusOV
Package Short Url http://bioconductor.org/packages/consensusOV/
Package Downloads Report Download Stats

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