genefu

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

Bioconductor version: Development (3.0)

Description: This package contains functions implementing various tasks usually required by gene expression analysis, especially in breast cancer studies: gene mapping between different microarray platforms, identification of molecular subtypes, implementation of published gene signatures, gene selection, survival analysis, ...

Author: Benjamin Haibe-Kains, Markus Schroeder, Gianluca Bontempi, Christos Sotiriou, John Quackenbush

Maintainer: Benjamin Haibe-Kains <bhklab.research at gmail.com>, Markus Schroeder <mschroed at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genefu")

To cite this package in a publication, start R and enter:

    citation("genefu")

Documentation

PDF R Script genefu An Introduction (HowTo)
PDF   Reference Manual
Text   README

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Software, Visualization
Version 1.15.0
In Bioconductor since BioC 2.8 (R-2.13)
License Artistic-2.0
Depends survcomp, mclust, biomaRt, R (>= 2.10)
Imports amap
Suggests GeneMeta, breastCancerVDX, breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, breastCancerUNT, breastCancerNKI, rmeta, Biobase, xtable
System Requirements
URL http://compbio.dfci.harvard.edu
Depends On Me
Imports Me
Suggests Me breastCancerMAINZ, breastCancerNKI, breastCancerTRANSBIG, breastCancerUNT, breastCancerUPP, breastCancerVDX

Package Downloads

Package Source genefu_1.15.0.tar.gz
Windows Binary genefu_1.15.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) genefu_1.15.0.tgz
Mac OS X 10.9 (Mavericks)
Package Downloads Report Download Stats

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