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## try http:// if https:// URLs are not supported
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biocLite("RJMCMCNucleosomes")

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RJMCMCNucleosomes

DOI: 10.18129/B9.bioc.RJMCMCNucleosomes    

This is the development version of RJMCMCNucleosomes; for the stable release version, see RJMCMCNucleosomes.

Bayesian hierarchical model for genome-wide nucleosome positioning with high-throughput short-read data (MNase-Seq)

Bioconductor version: Development (3.7)

This package does nucleosome positioning using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling.

Author: Pascal Belleau [aut], Rawane Samb [aut], Astrid DeschĂȘnes [cre, aut], Khader Khadraoui [aut], Lajmi Lakhal-Chaieb [aut], Arnaud Droit [aut]

Maintainer: Astrid DeschĂȘnes <adeschen at hotmail.com>

Citation (from within R, enter citation("RJMCMCNucleosomes")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RJMCMCNucleosomes")

Documentation

HTML R Script Nucleosome Positioning
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, BiologicalQuestion, ChIPSeq, Coverage, NucleosomePositioning, Sequencing, Software, StatisticalMethod
Version 1.3.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License Artistic-2.0
Depends R (>= 3.4), IRanges, GenomicRanges
Imports Rcpp (>= 0.12.5), consensusSeekeR, BiocGenerics, GenomeInfoDb, S4Vectors, BiocParallel, stats, graphics, methods, grDevices
LinkingTo Rcpp
Suggests BiocStyle, knitr, rmarkdown, nucleoSim, RUnit
SystemRequirements Rcpp
Enhances
URL https://github.com/ArnaudDroitLab/RJMCMCNucleosomes
BugReports https://github.com/ArnaudDroitLab/RJMCMCNucleosomes/issues
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RJMCMCNucleosomes_1.3.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) RJMCMCNucleosomes_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RJMCMCNucleosomes
Package Short Url http://bioconductor.org/packages/RJMCMCNucleosomes/
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