To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleoSim")

In most cases, you don't need to download the package archive at all.

nucleoSim

DOI: 10.18129/B9.bioc.nucleoSim    

This is the development version of nucleoSim; for the stable release version, see nucleoSim.

Generate synthetic nucleosome maps

Bioconductor version: Development (3.6)

This package can generate a synthetic map with reads covering the nucleosome regions as well as a synthetic map with forward and reverse reads emulating next-generation sequencing. The user has choice between three different distributions for the read positioning: Normal, Student and Uniform.

Author: Rawane Samb [aut], Astrid DeschĂȘnes [cre, aut], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Deschenes <adeschen at hotmail.com>

Citation (from within R, enter citation("nucleoSim")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nucleoSim")

Documentation

HTML R Script Generate synthetic nucleosome maps
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Genetics, Sequencing, Software, StatisticalMethod
Version 1.5.1
In Bioconductor since BioC 3.3 (R-3.3) (1.5 years)
License Artistic-2.0
Depends
Imports stats, IRanges, S4Vectors, graphics, methods
LinkingTo
Suggests BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit
SystemRequirements
Enhances
URL https://github.com/arnauddroitlab/nucleoSim
BugReports https://github.com/arnauddroitlab/nucleoSim/issues
Depends On Me
Imports Me
Suggests Me RJMCMCNucleosomes
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nucleoSim_1.5.1.tar.gz
Windows Binary nucleoSim_1.5.1.zip
Mac OS X 10.11 (El Capitan) nucleoSim_1.5.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/nucleoSim
Package Short Url http://bioconductor.org/packages/nucleoSim/
Package Downloads Report Download Stats

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