GenVisR

DOI: 10.18129/B9.bioc.GenVisR    

This is the development version of GenVisR; for the stable release version, see GenVisR.

Genomic Visualizations in R

Bioconductor version: Development (3.15)

Produce highly customizable publication quality graphics for genomic data primarily at the cohort level.

Author: Zachary Skidmore [aut, cre], Alex Wagner [aut], Robert Lesurf [aut], Katie Campbell [aut], Jason Kunisaki [aut], Obi Griffith [aut], Malachi Griffith [aut]

Maintainer: Zachary Skidmore <zlskidmore at gmail.com>

Citation (from within R, enter citation("GenVisR")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("GenVisR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews Classification, DNASeq, DataRepresentation, Infrastructure, Software
Version 1.27.0
In Bioconductor since BioC 3.3 (R-3.3) (5.5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.3.0), methods
Imports AnnotationDbi, biomaRt(>= 2.45.8), BiocGenerics, Biostrings, DBI, FField, GenomicFeatures, GenomicRanges(>= 1.25.4), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0), gtable, gtools, IRanges(>= 2.7.5), plyr (>= 1.8.3), reshape2, Rsamtools, scales, viridis, data.table, BSgenome, GenomeInfoDb, VariantAnnotation
LinkingTo
Suggests BiocStyle, BSgenome.Hsapiens.UCSC.hg19, knitr, RMySQL, roxygen2, testthat, TxDb.Hsapiens.UCSC.hg19.knownGene, rmarkdown, vdiffr, formatR, TxDb.Hsapiens.UCSC.hg38.knownGene, BSgenome.Hsapiens.UCSC.hg38
SystemRequirements
Enhances
URL
BugReports https://github.com/griffithlab/GenVisR/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/GenVisR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GenVisR
Package Short Url https://bioconductor.org/packages/GenVisR/
Package Downloads Report Download Stats

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