ERSSA

DOI: 10.18129/B9.bioc.ERSSA  

This is the development version of ERSSA; for the stable release version, see ERSSA.

Empirical RNA-seq Sample Size Analysis

Bioconductor version: Development (3.18)

The ERSSA package takes user supplied RNA-seq differential expression dataset and calculates the number of differentially expressed genes at varying biological replicate levels. This allows the user to determine, without relying on any a priori assumptions, whether sufficient differential detection has been acheived with their RNA-seq dataset.

Author: Zixuan Shao [aut, cre]

Maintainer: Zixuan Shao <Zixuanshao.zach at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ERSSA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, MultipleComparison, QualityControl, RNASeq, Software, Transcription
Version	1.19.0
In Bioconductor since	BioC 3.8 (R-3.5) (4.5 years)
License	GPL-3 | file LICENSE
Depends	R (>= 4.0.0)
Imports	edgeR(>= 3.23.3), DESeq2(>= 1.21.16), ggplot2 (>= 3.0.0), RColorBrewer (>= 1.1-2), plyr (>= 1.8.4), BiocParallel(>= 1.15.8), grDevices, stats, utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/zshao1/ERSSA
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary	ERSSA_1.19.0.zip
macOS Binary (x86_64)	ERSSA_1.19.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ERSSA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ERSSA
Bioc Package Browser	https://code.bioconductor.org/browse/ERSSA/
Package Short Url	https://bioconductor.org/packages/ERSSA/
Package Downloads Report	Download Stats