To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("apeglm")

In most cases, you don't need to download the package archive at all.

apeglm

DOI: 10.18129/B9.bioc.apeglm    

This is the development version of apeglm; for the stable release version, see apeglm.

Approximate posterior estimation for GLM coefficients

Bioconductor version: Development (3.7)

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Author: Anqi Zhu, Joseph G. Ibrahim, Michael I. Love

Maintainer: Anqi Zhu <anqizhu at live.unc.edu>

Citation (from within R, enter citation("apeglm")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("apeglm")

Documentation

HTML R Script Effect size estimation with apeglm
PDF   Reference Manual
Text   NEWS

Details

biocViews Bayesian, DifferentialExpression, GeneExpression, RNASeq, Sequencing, Software
Version 1.1.4
License GPL-2
Depends
Imports emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils
LinkingTo
Suggests DESeq2, airway, BiocStyle, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me DESeq2
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package apeglm_1.1.4.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) apeglm_1.1.4.tgz
Source Repository git clone https://git.bioconductor.org/packages/apeglm
Package Short Url http://bioconductor.org/packages/apeglm/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: