PING

Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data

Bioconductor version: Release (2.14)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xuezhang at jhsph.edu>, Raphael Gottardo <raph at stat.ubc.ca>, Sangsoon Woo, <swoo at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("PING")

To cite this package in a publication, start R and enter:

    citation("PING")

Documentation

PDF R Script The PING users guide
PDF R Script Using PING with paired-end sequencing data
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, Sequencing, Software, StatisticalMethod, Visualization
Version 2.8.0
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15.0), chipseq, IRanges, GenomicRanges
Imports methods, PICS, graphics, grDevices, stats, Gviz, fda, BSgenome, stats4, BiocGenerics
Suggests parallel, ShortRead, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source PING_2.8.0.tar.gz
Windows Binary PING_2.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) PING_2.8.0.tgz
Mac OS X 10.9 (Mavericks)
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