To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("PICS")

In most cases, you don't need to download the package archive at all.

PICS

Probabilistic inference of ChIP-seq

Bioconductor version: Release (2.14)

Probabilistic inference of ChIP-Seq using an empirical Bayes mixture model approach.

Author: Xuekui Zhang <xzhang at stat.ubc.ca>, Raphael Gottardo <rgottard at fhcrc.org>

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("PICS")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("PICS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PICS")

 

PDF R Script The PICS users guide
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Clustering, Sequencing, Software, Visualization
Version 2.8.0
In Bioconductor since BioC 2.6 (R-2.11)
License Artistic-2.0
Depends R (>= 2.14.0), BiocGenerics(>= 0.1.3)
Imports methods, stats4, IRanges, GenomicRanges, graphics, grDevices, stats, Rsamtools, GenomicAlignments
Suggests ShortRead, rtracklayer, parallel
System Requirements
URL
Depends On Me
Imports Me PING
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source PICS_2.8.0.tar.gz
Windows Binary PICS_2.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) PICS_2.8.0.tgz
Mac OS X 10.9 (Mavericks) PICS_2.8.0.tgz
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