To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("simpIntLists")

In most cases, you don't need to download the package archive at all.

simpIntLists

This is the development version of simpIntLists; for the stable release version, see simpIntLists.

The package contains BioGRID interactions for various organisms in a simple format

Bioconductor version: Development (3.0)

The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("simpIntLists")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("simpIntLists")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("simpIntLists")

 

PDF R Script simpIntLists
PDF   Reference Manual

Details

biocViews ExperimentData
Version 1.1.0
License GPL (>= 2)
Depends
Imports
Suggests
System Requirements
URL
Depends On Me ibh
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source simpIntLists_1.1.0.tar.gz
Windows Binary simpIntLists_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) simpIntLists_1.1.0.tgz
Mac OS X 10.9 (Mavericks) simpIntLists_1.1.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center