DOI: 10.18129/B9.bioc.ibh    

This is the development version of ibh; for the stable release version, see ibh.

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Development (3.9)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

Citation (from within R, enter citation("ibh")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
BiocManager::install("ibh", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script ibh
PDF   Reference Manual


biocViews DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version 1.31.0
In Bioconductor since BioC 2.8 (R-2.13) (8 years)
License GPL (>= 2)
Depends simpIntLists
Suggests yeastCC, stats
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package ibh_1.31.0.tar.gz
Windows Binary ibh_1.31.0.zip
Mac OS X 10.11 (El Capitan) ibh_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ibh
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ibh
Package Short Url http://bioconductor.org/packages/ibh/
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