ibh

Interaction Based Homogeneity for Evaluating Gene Lists

Bioconductor version: Release (2.14)

This package contains methods for calculating Interaction Based Homogeneity to evaluate fitness of gene lists to an interaction network which is useful for evaluation of clustering results and gene list analysis. BioGRID interactions are used in the calculation. The user can also provide their own interactions.

Author: Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin Atalay.

Maintainer: Kircicegi Korkmaz <e102771 at ceng.metu.edu.tr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ibh")

To cite this package in a publication, start R and enter:

    citation("ibh")

Documentation

PDF R Script ibh
PDF   Reference Manual

Details

biocViews DataImport, GraphAndNetwork, NetworkEnrichment, QualityControl, Software
Version 1.12.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL (>= 2)
Depends simpIntLists
Imports
Suggests yeastCC, stats
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source ibh_1.12.0.tar.gz
Windows Binary ibh_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ibh_1.12.0.tgz
Mac OS X 10.9 (Mavericks)
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