HiCDataLymphoblast

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: Development (3.0)

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("HiCDataLymphoblast")

To cite this package in a publication, start R and enter:

    citation("HiCDataLymphoblast")

Documentation

PDF package_vignettes.pdf
PDF   Reference Manual

Details

biocViews ExperimentData, HighThroughputSequencingData
Version 1.1.0
License GPL-3
Depends
Imports
Suggests GOTHiC, ShortRead
System Requirements
URL
Depends On Me
Imports Me
Suggests Me GOTHiC

Package Downloads

Package Source HiCDataLymphoblast_1.1.0.tar.gz
Windows Binary HiCDataLymphoblast_1.1.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) HiCDataLymphoblast_1.1.0.tgz
Mac OS X 10.9 (Mavericks) HiCDataLymphoblast_1.1.0.tgz
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