To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")

In most cases, you don't need to download the package archive at all.

HiCDataLymphoblast

Human lymphoblastoid HiC data from Lieberman-Aiden et al. 2009

Bioconductor version: Release (3.0)

The HiC data from human lymphoblastoid cell line (HindIII restriction) was retrieved from the sequence read archive and two ends of the paired reads were aligned separately with bowtie.

Author: Borbala Mifsud

Maintainer: Borbala Mifsud <Borbala.Mifsud at cancer.org.uk>

Citation (from within R, enter citation("HiCDataLymphoblast")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiCDataLymphoblast")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataLymphoblast")

 

PDF package_vignettes.pdf
PDF   Reference Manual

Details

biocViews ExperimentData, HighThroughputSequencingData
Version 1.1.1
License GPL-3
Depends
Imports
Suggests GOTHiC, ShortRead
System Requirements
URL
Depends On Me
Imports Me
Suggests Me GOTHiC

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HiCDataLymphoblast_1.1.1.tar.gz
Windows Binary HiCDataLymphoblast_1.1.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) HiCDataLymphoblast_1.1.1.tgz
Mac OS X 10.9 (Mavericks) HiCDataLymphoblast_1.1.1.tgz
Browse/checkout source (username/password: readonly)
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