mdqc

Mahalanobis Distance Quality Control for microarrays

Bioconductor version: Development (3.0)

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author: Justin Harrington

Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mdqc")

Citation (from within R, enter citation("mdqc")):

Documentation

PDF R Script Introduction to MDQC
PDF   Reference Manual

Details

biocViews Microarray, QualityControl, Software
Version 1.27.0
In Bioconductor since BioC 2.2 (R-2.7)
License LGPL (>= 2)
Depends R (>= 2.2.1), cluster, MASS
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me arrayMvout
Suggests Me

Package Downloads

Package Source mdqc_1.27.0.tar.gz
Windows Binary mdqc_1.27.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mdqc_1.27.0.tgz
Mac OS X 10.9 (Mavericks) mdqc_1.27.0.tgz
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