arrayMvout

multivariate outlier detection for expression array QA

Bioconductor version: Development (3.0)

This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate

Author: Z. Gao, A. Asare, R. Wang, V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("arrayMvout")

To cite this package in a publication, start R and enter:

    citation("arrayMvout")

Documentation

PDF R Script arrayMvout -- multivariate outlier algorithm for expression arrays
PDF   Reference Manual

Details

biocViews Infrastructure, Microarray, QualityControl, Software
Version 1.23.0
In Bioconductor since BioC 2.3 (R-2.8)
License Artistic-2.0
Depends R (>= 2.6.0), tools, methods, utils, parody, Biobase, affy, lumi
Imports simpleaffy, mdqc, affyContam
Suggests MAQCsubset, mvoutData, lumiBarnes, affyPLM, affydata, hgu133atagcdf
System Requirements
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Package Downloads

Package Source arrayMvout_1.23.0.tar.gz
Windows Binary arrayMvout_1.23.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) arrayMvout_1.23.0.tgz
Mac OS X 10.9 (Mavericks)
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