To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mdqc")

In most cases, you don't need to download the package archive at all.

mdqc

Mahalanobis Distance Quality Control for microarrays

Bioconductor version: Release (3.0)

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author: Justin Harrington

Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>

Citation (from within R, enter citation("mdqc")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mdqc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdqc")

 

PDF R Script Introduction to MDQC
PDF   Reference Manual

Details

biocViews Microarray, QualityControl, Software
Version 1.28.0
In Bioconductor since BioC 2.2 (R-2.7)
License LGPL (>= 2)
Depends R (>= 2.2.1), cluster, MASS
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me arrayMvout
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mdqc_1.28.0.tar.gz
Windows Binary mdqc_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mdqc_1.28.0.tgz
Mac OS X 10.9 (Mavericks) mdqc_1.28.0.tgz
Browse/checkout source (username/password: readonly)
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