isomiRs

DOI: 10.18129/B9.bioc.isomiRs    

This is the development version of isomiRs; for the stable release version, see isomiRs.

Analyze isomiRs and miRNAs from small RNA-seq

Bioconductor version: Development (3.7)

Characterization of miRNAs and isomiRs, clustering and differential expression.

Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut]

Maintainer: Lorena Pantano <lorena.pantano at gmail.com>

Citation (from within R, enter citation("isomiRs")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("isomiRs")

Documentation

HTML R Script miRNA and isomiR analysis
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, DifferentialExpression, RNASeq, Software, miRNA
Version 1.7.3
In Bioconductor since BioC 3.3 (R-3.3) (2 years)
License MIT + file LICENSE
Depends R (>= 3.4), DiscriMiner, SummarizedExperiment
Imports AnnotationDbi, assertive.sets, BiocGenerics(>= 0.7.5), Biobase, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, tidyr, S4Vectors, tidyr, tibble, targetscan.Hs.eg.db
LinkingTo
Suggests knitr, org.Mm.eg.db, cluster, clusterProfiler, pheatmap, BiocStyle, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package isomiRs_1.7.3.tar.gz
Windows Binary isomiRs_1.7.3.zip
Mac OS X 10.11 (El Capitan) isomiRs_1.7.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/isomiRs
Package Short Url http://bioconductor.org/packages/isomiRs/
Package Downloads Report Download Stats

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