isomiRs
This is the development version of isomiRs; for the stable release version, see isomiRs.
Analyze isomiRs and miRNAs from small RNA-seq
Bioconductor version: Development (3.19)
Characterization of miRNAs and isomiRs, clustering and differential expression.
Author: Lorena Pantano [aut, cre], Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud Publica)
Maintainer: Lorena Pantano <lorena.pantano at gmail.com>
Citation (from within R, enter
citation("isomiRs")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("isomiRs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Clustering, DifferentialExpression, ImmunoOncology, RNASeq, Software, miRNA |
| Version | 1.31.1 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0), SummarizedExperiment |
| Imports | AnnotationDbi, assertive.sets, BiocGenerics, Biobase, broom, cluster, cowplot, DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots, ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally, limma, methods, RColorBrewer, readr, reshape, rlang, stats, stringr, S4Vectors, tidyr, tibble |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/lpantano/isomiRs/issues |
See More
| Suggests | knitr, rmarkdown, org.Mm.eg.db, targetscan.Hs.eg.db, pheatmap, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/isomiRs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/isomiRs |
| Package Short Url | https://bioconductor.org/packages/isomiRs/ |
| Package Downloads Report | Download Stats |