fCCAC

DOI: 10.18129/B9.bioc.fCCAC    

This is the development version of fCCAC; for the stable release version, see fCCAC.

functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets

Bioconductor version: Development (3.14)

An application of functional Canonical Correlation Analysis to allow the assessment of: (i) reproducibility of biological or technical replicates, analyzing their shared covariance in higher order components; and (ii) the associations between different datasets.

Author: Pedro Madrigal [aut, cre]

Maintainer: Pedro Madrigal <pmadrigal at ebi.ac.uk>

Citation (from within R, enter citation("fCCAC")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("fCCAC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("fCCAC")

 

PDF R Script fCCAC Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Coverage, Epigenetics, FunctionalGenomics, Sequencing, Software, Transcription
Version 1.19.11
In Bioconductor since BioC 3.4 (R-3.3) (5 years)
License Artistic-2.0
Depends R (>= 3.3.0), S4Vectors, IRanges, GenomicRanges, grid
Imports fda, RColorBrewer, genomation, ggplot2, ComplexHeatmap, grDevices, stats, utils
LinkingTo
Suggests RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package fCCAC_1.19.11.tar.gz
Windows Binary fCCAC_1.19.11.zip
macOS 10.13 (High Sierra) fCCAC_1.19.11.tgz
Source Repository git clone https://git.bioconductor.org/packages/fCCAC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/fCCAC
Package Short Url https://bioconductor.org/packages/fCCAC/
Package Downloads Report Download Stats

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