bayNorm

DOI: 10.18129/B9.bioc.bayNorm    

This is the development version of bayNorm; for the stable release version, see bayNorm.

Single-cell RNA sequencing data normalization

Bioconductor version: Development (3.15)

bayNorm is used for normalizing single-cell RNA-seq data.

Author: Wenhao Tang <wt215 at ic.ac.uk>, Fran<U+00E7>ois Bertaux <wt215 at ic.ac.uk>, Philipp Thomas <wt215 at ic.ac.uk>, Claire Stefanelli <wt215 at ic.ac.uk>, Malika Saint <wt215 at ic.ac.uk>, Samuel Marguerat <wt215 at ic.ac.uk>, Vahid Shahrezaei <wt215 at ic.ac.uk>

Maintainer: Wenhao Tang <wt215 at ic.ac.uk>

Citation (from within R, enter citation("bayNorm")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("bayNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews ImmunoOncology, Normalization, RNASeq, Sequencing, SingleCell, Software
Version 1.13.0
In Bioconductor since BioC 3.8 (R-3.5) (3 years)
License GPL (>= 2)
Depends R (>= 3.5)
Imports Rcpp (>= 0.12.12), BB, foreach, iterators, doSNOW, Matrix, parallel, MASS, locfit, fitdistrplus, stats, methods, graphics, grDevices, SingleCellExperiment, SummarizedExperiment, BiocParallel, utils
LinkingTo Rcpp, RcppArmadillo, RcppProgress
Suggests knitr, rmarkdown, BiocStyle, devtools, testthat
SystemRequirements
Enhances
URL https://github.com/WT215/bayNorm
BugReports https://github.com/WT215/bayNorm/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/bayNorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/bayNorm
Package Short Url https://bioconductor.org/packages/bayNorm/
Package Downloads Report Download Stats

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