DOI: 10.18129/B9.bioc.PCAN    

This is the development version of PCAN; for the stable release version, see PCAN.

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: Development (3.8)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Citation (from within R, enter citation("PCAN")):


To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly=TRUE))
BiocManager::install("PCAN", version = "devel")


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Assessing gene relevance for a set of phenotypes
PDF   Reference Manual


biocViews Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version 1.9.0
In Bioconductor since BioC 3.3 (R-3.3) (2.5 years)
License CC BY-NC-ND 4.0
Depends R (>= 3.3), BiocParallel
Imports grDevices, stats
Suggests BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PCAN_1.9.0.tar.gz
Windows Binary PCAN_1.9.0.zip
Mac OS X 10.11 (El Capitan) PCAN_1.9.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PCAN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PCAN
Package Short Url http://bioconductor.org/packages/PCAN/
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