MLInterfaces

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

Bioconductor version: Development (3.0)

Uniform interfaces to machine learning code for data in Bioconductor containers

Author: Vince Carey <stvjc at channing.harvard.edu>, Robert Gentleman, Jess Mar, and contributions from Jason Vertrees <jv at cs.dartmouth.edu> and Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: V. Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("MLInterfaces")

To cite this package in a publication, start R and enter:

    citation("MLInterfaces")

Documentation

PDF R Script A machine learning tutorial: applications of the Bioconductor MLInterfaces package to expression and ChIP-Seq data
PDF R Script MLInterfaces Computer Cluster
PDF R Script MLInterfaces devel for schema-based MLearn
PDF R Script MLInterfaces Primer
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Clustering, Software
Version 1.45.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License LGPL
Depends R (>= 2.9), Biobase, MASS, methods, genefilter, rpart, rda, annotate, cluster, sfsmisc
Imports mboost, gdata, pls
Suggests class, e1071, ipred, randomForest, gpls, pamr, rpart, MASS, nnet, ALL, gbm, mlbench, hgu95av2.db, som, RColorBrewer, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, gbm, mboost, sfsmisc, party
System Requirements
URL
Depends On Me a4Classif, pRoloc
Imports Me
Suggests Me BiocCaseStudies

Package Downloads

Package Source MLInterfaces_1.45.0.tar.gz
Windows Binary MLInterfaces_1.45.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MLInterfaces_1.45.0.tgz
Mac OS X 10.9 (Mavericks)
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