MLInterfaces

DOI: 10.18129/B9.bioc.MLInterfaces    

This is the development version of MLInterfaces; for the stable release version, see MLInterfaces.

Uniform interfaces to R machine learning procedures for data in Bioconductor containers

Bioconductor version: Development (3.8)

This package provides uniform interfaces to machine learning code for data in R and Bioconductor containers.

Author: Vince Carey <stvjc at channing.harvard.edu>, Robert Gentleman, Jess Mar, and contributions from Jason Vertrees <jv at cs.dartmouth.edu> and Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("MLInterfaces")):

Installation

To install this package, start R and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("MLInterfaces", version = "devel")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MLInterfaces")

 

PDF R Script A machine learning tutorial: applications of the Bioconductor MLInterfaces package to expression and ChIP-Seq data
PDF R Script MLInterfaces Computer Cluster
PDF R Script MLInterfaces devel for schema-based MLearn
PDF R Script MLInterfaces Primer
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Clustering, Software
Version 1.61.1
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License LGPL
Depends R (>= 3.5), methods, BiocGenerics(>= 0.13.11), Biobase, annotate, cluster
Imports gdata, pls, sfsmisc, MASS, rpart, rda, genefilter, fpc, ggvis, shiny, gbm, RColorBrewer, hwriter, threejs (>= 0.2.2), mlbench, stats4, tools, grDevices, graphics, stats
LinkingTo
Suggests class, e1071, ipred, randomForest, gpls, pamr, nnet, ALL, hgu95av2.db, som, hu6800.db, lattice, caret (>= 5.07), golubEsets, ada, keggorthology, kernlab, mboost, party
SystemRequirements
Enhances parallel
URL
Depends On Me a4Classif, pRoloc, proteomics, SigCheck
Imports Me
Suggests Me BiocCaseStudies
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MLInterfaces_1.61.1.tar.gz
Windows Binary MLInterfaces_1.61.1.zip
Mac OS X 10.11 (El Capitan) MLInterfaces_1.61.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/MLInterfaces
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MLInterfaces
Package Short Url http://bioconductor.org/packages/MLInterfaces/
Package Downloads Report Download Stats

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