Depends On Me |
ACME, affy, affyPLM, altcdfenvs, amplican, AnnotationDbi, AnnotationForge, AnnotationHub, ATACseqQC, beadarray, bioassayR, Biobase, Biostrings, bnbc, BSgenome, BSgenomeForge, bsseq, Cardinal, Category, categoryCompare, ChAMPdata, chipseq, ChIPseqR, ChromHeatMap, clusterExperiment, codelink, consensusDE, consensusSeekeR, CoreGx, CRISPRseek, cummeRbund, DelayedArray, ensembldb, ExperimentHub, ExperimentHubData, GDSArray, geneplotter, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, GenomicScores, ggbio, girafe, graph, GSEABase, GUIDEseq, HelloRanges, interactiveDisplay, interactiveDisplayBase, IRanges, ISLET, liftOver, lute, MBASED, MGnifyR, MineICA, minfi, MLInterfaces, MotifDb, mpra, MSnbase, multtest, NADfinder, ngsReports, oligo, OrganismDbi, pandaR, plyranges, profileplyr, pwalign, PWMEnrich, QSutils, RareVariantVis, REDseq, Repitools, RnBeads, RPA, rsbml, S4Arrays, S4Vectors, ShortRead, simplifyEnrichment, soGGi, SparseArray, spqn, StructuralVariantAnnotation, SummarizedBenchmark, svaNUMT, svaRetro, TEQC, tigre, topdownr, topGO, txdbmaker, UNDO, UniProt.ws, updateObject, VanillaICE, VariantAnnotation, VariantFiltering, VCFArray, XVector, yamss |
Imports Me |
a4Preproc, affycoretools, affylmGUI, alabaster.bumpy, alabaster.files, alabaster.matrix, alabaster.ranges, alabaster.se, AllelicImbalance, AneuFinder, annmap, annotate, AnnotationHubData, ASpli, ATACseqTFEA, atena, AUCell, autonomics, bambu, bamsignals, BASiCS, batchelor, beachmat, bigmelon, BiocBook, biocGraph, BiocHail, BiocIO, BiocSingular, biotmle, biovizBase, biscuiteer, BiSeq, blima, breakpointR, BrowserViz, BubbleTree, bumphunter, BUSpaRse, CAGEfightR, CAGEr, casper, celaref, CellaRepertorium, CellBench, CellMixS, CellTrails, cfDNAPro, cghMCR, ChemmineOB, ChemmineR, ChIPComp, chipenrich, chipenrich.data, ChIPpeakAnno, ChIPQC, ChIPseeker, chipseq, chromstaR, chromVAR, cicero, CircSeqAlignTk, clusterSeq, cn.mops, CNEr, CNVPanelizer, CNVRanger, COCOA, cola, compEpiTools, CompoundDb, crisprBase, crisprBowtie, crisprBwa, crisprDesign, crisprScore, crisprShiny, crisprViz, crlmm, crossmeta, csaw, CTexploreR, cummeRbund, CuratedAtlasQueryR, curatedCRCData, curatedOvarianData, cydar, dada2, dagLogo, DAMEfinder, ddCt, decompTumor2Sig, deconvR, DegCre, DEGreport, DelayedDataFrame, demuxSNP, derfinder, DEScan2, DESeq2, DESpace, destiny, DEWSeq, DEXSeq, diffcoexp, diffHic, dinoR, DirichletMultinomial, DiscoRhythm, DNAfusion, dreamlet, DRIMSeq, DropletUtils, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisaR, enhancerHomologSearch, epialleleR, EpiCompare, epigenomix, epimutacions, epistack, EpiTxDb, epivizrChart, epivizrStandalone, erma, esATAC, ExpHunterSuite, factR, FamAgg, fastseg, ffpe, FindIT2, FLAMES, flowBin, flowClust, flowCore, flowFP, FlowSOM, flowSpecs, flowStats, flowWorkspace, fmcsR, FRASER, frma, GA4GHclient, GA4GHshiny, gcapc, gDNAinRNAseqData, gDNAx, geneAttribution, geneClassifiers, GENESIS, GenomAutomorphism, GenomicAlignments, GenomicInteractions, GenomicPlot, GenomicTuples, GenVisR, GeomxTools, GeoMxWorkflows, gINTomics, glmGamPoi, gmapR, gmoviz, goseq, GOTHiC, gpuMagic, Gviz, HDF5Array, heatmaps, hermes, HicAggR, HiCDOC, HiCExperiment, HiContacts, HiLDA, hiReadsProcessor, homosapienDEE2CellScore, hopach, HTSeqGenie, icetea, igvR, igvShiny, IHW, IHWpaper, IMAS, infercnv, INSPEcT, InTAD, intansv, InteractionSet, IntEREst, IONiseR, iSEE, IsoformSwitchAnalyzeR, isomiRs, IVAS, KCsmart, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, ldblock, lemur, LinTInd, lisaClust, LOLA, mariner, maser, MAST, matter, MEAL, meshr, MetaboAnnotation, metaMS, metaseqR2, methInheritSim, MethylAid, methylPipe, methylumi, mia, miaViz, microbiomeDataSets, microbiomeMarker, miloR, mimager, MinimumDistance, MIRA, MiRaGE, missMethyl, mobileRNA, Modstrings, mogsa, monaLisa, monocle, Moonlight2R, Motif2Site, motifbreakR, MouseGastrulationData, MouseThymusAgeing, msa, MsBackendSql, MsExperiment, MSnID, MultiAssayExperiment, multicrispr, MultiDataSet, multiMiR, MultimodalExperiment, mumosa, MutationalPatterns, mzR, NanoStringNCTools, ncdfFlow, nearBynding, npGSEA, nucleR, oligoClasses, openCyto, openPrimeR, ORFik, OUTRIDER, parglms, pcaMethods, PDATK, pdInfoBuilder, PharmacoGx, PhIPData, PhosR, phyloseq, Pi, piano, PING, PIPETS, plyinteractions, podkat, pram, primirTSS, proDA, profileScoreDist, pRoloc, pRolocGUI, ProteoDisco, PSMatch, PureCN, QFeatures, qPLEXanalyzer, qsea, QTLExperiment, QuasR, R3CPET, R453Plus1Toolbox, RadioGx, raer, raerdata, RaggedExperiment, ramr, ramwas, RCAS, RcisTarget, RCy3, RCyjs, recoup, REMP, ReportingTools, RGMQL, RGSEA, RiboCrypt, RiboDiPA, RiboProfiling, ribosomeProfilingQC, RJMCMCNucleosomes, rnaEditr, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAseqCovarImpute, roar, rols, Rqc, rqubic, Rsamtools, rsbml, rScudo, RTCGAToolbox, rtracklayer, saseR, SC3, SCArray.sat, scater, scDblFinder, scmap, SCnorm, SCOPE, scPipe, scran, scRNAseq, scruff, scuttle, SeqVarTools, sevenC, SGSeq, SharedObject, shinyMethyl, signatureSearch, signeR, signifinder, simPIC, single, SingleCellExperiment, SingleMoleculeFootprinting, sitadela, SNPhood, snpStats, sparrow, SpatialExperiment, SpatialFeatureExperiment, spatialLIBD, spatzie, Spectra, spicyR, splatter, SpliceWiz, SplicingGraphs, SQLDataFrame, sRACIPE, sscu, standR, strandCheckR, Streamer, Structstrings, SummarizedExperiment, SynMut, systemPipeR, systemPipeRdata, tadar, TAPseq, target, TCGAutils, TCseq, TENxBUSData, TENxIO, TFBSTools, tidySpatialExperiment, TitanCNA, ToxicoGx, trackViewer, transcriptR, transite, TransView, TreeSummarizedExperiment, tRNA, tRNAscanImport, TVTB, txcutr, Ularcirc, UMI4Cats, unifiedWMWqPCR, universalmotif, uSORT, VariantTools, VariantToolsData, velociraptor, VisiumIO, wavClusteR, weitrix, xcms, XDE, XVector |
Suggests Me |
acde, adverSCarial, aggregateBioVar, AIMS, AlphaMissenseR, ASSET, ASURAT, BaalChIP, baySeq, bigmelon, BiocCheck, BiocParallel, BiocStyle, biocViews, biosigner, BiRewire, BLMA, BloodGen3Module, bnem, borealis, BUScorrect, BUSseq, CAFE, CAMERA, CausalR, ccrepe, CDI, cellmigRation, CellNOptR, CexoR, chihaya, ChIPanalyser, ChIPXpress, CHRONOS, CINdex, cleanUpdTSeq, clipper, ClustAll, clustComp, CNORfeeder, CNORfuzzy, coMET, ConnectivityMap, consensus, cosmiq, COSNet, cpvSNP, cypress, DeProViR, DEsubs, DExMA, DMRcaller, DMRcate, EnhancedVolcano, ENmix, EpiMix, epiNEM, EventPointer, fCCAC, fcScan, fgga, FGNet, FieldEffectCrc, flowCut, flowTime, fmrs, GateFinder, gCrisprTools, gdsfmt, GEM, GeneNetworkBuilder, GeneOverlap, geneplast, geneRxCluster, geNetClassifier, genomation, GEOquery, GeoTcgaData, ginmappeR, GMRP, GOstats, GrafGen, GraphPAC, GreyListChIP, grndata, GSVA, GWASTools, h5vc, Harman, HarmanData, healthyControlsPresenceChecker, hiAnnotator, HiCDCPlus, hierGWAS, HIREewas, HPiP, hypergraph, iCARE, iClusterPlus, IFAA, illuminaio, immunotation, InPAS, INPower, IPO, kebabs, KEGGREST, LACE, MAGAR, magpie, massiR, MatrixQCvis, MatrixRider, MBttest, mCSEA, Mergeomics, MetaboSignal, metagene2, metagenomeSeq, MetCirc, methylCC, methylInheritance, MetNet, microbiome, microRNAome, miRBaseConverter, miRcomp, mirIntegrator, miRLAB, mnem, mosbi, motifStack, MsQuality, multiClust, MultiMed, MultiRNAflow, MungeSumstats, MWASTools, ncRNAtools, nempi, NetSAM, nondetects, NoRCE, nucleoSim, OMICsPCA, OncoScore, PAA, panelcn.mops, Path2PPI, PathNet, pathview, PCAtools, pepXMLTab, phenomis, PhenStat, powerTCR, proBAMr, qpgraph, quantro, QuartPAC, RBGL, rBiopaxParser, rcellminer, rCGH, REBET, RegParallel, RESOLVE, rfaRm, RGraph2js, Rgraphviz, rgsepd, riboSeqR, ROntoTools, ropls, ROSeq, RTN, RTNduals, RTNsurvival, rTRM, SAIGEgds, sangerseqR, SANTA, sarks, SCArray, scDataviz, scmeth, scMultiome, screenCounter, scry, segmentSeq, SeqArray, seqPattern, seqTools, sesameData, SICtools, sigFeature, sigsquared, SIMAT, similaRpeak, SIMLR, singleCellTK, SingleR, slingshot, SNPRelate, SpacePAC, SparseSignatures, spatialHeatmap, specL, STATegRa, STRINGdb, SUITOR, systemPipeTools, TCC, TFEA.ChIP, TIN, transcriptogramer, traseR, TreeAndLeaf, tripr, tRNAdbImport, TRONCO, Uniquorn, variancePartition, VERSO, xcore, xcoredata, zenith |