BSgenome
This is the development version of BSgenome; for the stable release version, see BSgenome.
Software infrastructure for efficient representation of full genomes and their SNPs
Bioconductor version: Development (3.20)
Infrastructure shared by all the Biostrings-based genome data packages.
Author: Hervé Pagès [aut, cre]
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
Citation (from within R, enter
citation("BSgenome")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BSgenome")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BSgenome")
Efficient genome searching with Biostrings and the BSgenome data packages | R Script | |
How to forge a BSgenome data package | ||
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, DataRepresentation, Genetics, Infrastructure, SNP, SequenceMatching, Software |
Version | 1.71.4 |
In Bioconductor since | BioC 1.9 (R-2.4) (17.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.8.0), methods, BiocGenerics(>= 0.13.8), S4Vectors(>= 0.17.28), IRanges(>= 2.13.16), GenomeInfoDb(>= 1.25.6), GenomicRanges(>= 1.31.10), Biostrings(>= 2.47.6), BiocIO, rtracklayer |
Imports | utils, stats, matrixStats, XVector, Rsamtools |
System Requirements | |
URL | https://bioconductor.org/packages/BSgenome |
Bug Reports | https://github.com/Bioconductor/BSgenome/issues |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | BSgenome_1.71.4.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | BSgenome_1.71.4.tgz |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/BSgenome |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BSgenome |
Bioc Package Browser | https://code.bioconductor.org/browse/BSgenome/ |
Package Short Url | https://bioconductor.org/packages/BSgenome/ |
Package Downloads Report | Download Stats |