annotate
This is the development version of annotate; for the stable release version, see annotate.
Annotation for microarrays
Bioconductor version: Development (3.20)
Using R enviroments for annotation.
Author: R. Gentleman
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("annotate")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("annotate")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("annotate")
Annotation Overview | R Script | |
Basic GO Usage | R Script | |
HowTo: Build and use chromosomal information | HTML | R Script |
HowTo: Get HTML Output | R Script | |
HOWTO: Use the online query tools | R Script | |
Using Affymetrix Probe Level Data | R Script | |
Using Bioconductor's Annotation Libraries | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Annotation, GO, Pathways, Software |
Version | 1.83.0 |
In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10), AnnotationDbi(>= 1.27.5), XML |
Imports | Biobase, DBI, xtable, graphics, utils, stats, methods, BiocGenerics(>= 0.13.8), httr |
System Requirements | |
URL |
See More
Suggests | hgu95av2.db, genefilter, Biostrings(>= 2.25.10), IRanges, rae230a.db, rae230aprobe, tkWidgets, GO.db, org.Hs.eg.db, org.Mm.eg.db, humanCHRLOC, Rgraphviz, RUnit, BiocStyle, knitr |
Linking To | |
Enhances | |
Depends On Me | ChromHeatMap, geneplotter, GSEABase, idiogram, MGFM, MineICA, MLInterfaces, Neve2006, phenoTest, PREDA, PREDAsampledata, sampleClassifier, SemDist |
Imports Me | CAFE, Category, categoryCompare, CNEr, codelink, debrowser, DrugVsDisease, genefilter, GlobalAncova, globaltest, GOstats, lumi, methylumi, MGFR, phenoTest, qpgraph, ReportingTools, SGCP, tigre, UMI4Cats |
Suggests Me | BiocGenerics, GenomicRanges, GSAR, GSEAlm, hmdbQuery, metagenomeSeq, MLP, pageRank, PhosR, puma, RnBeads, siggenes, SummarizedExperiment, systemPipeR |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | annotate_1.83.0.tar.gz |
Windows Binary | annotate_1.83.0.zip |
macOS Binary (x86_64) | annotate_1.81.2.tgz |
macOS Binary (arm64) | annotate_1.81.2.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/annotate |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/annotate |
Bioc Package Browser | https://code.bioconductor.org/browse/annotate/ |
Package Short Url | https://bioconductor.org/packages/annotate/ |
Package Downloads Report | Download Stats |