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Revision: 117101
Author: u.bodenhofer
Date: 2016-05-04T10:26:16+00:00
Paths:
Deleted  /trunk/madman/Rpacks/procoil/data/PrOCoilModel.rda
Deleted  /trunk/madman/Rpacks/procoil/data/PrOCoilModelBA.rda
removed unnecessary files
Revision: 117100
Author: j.rainer
Date: 2016-05-04T10:26:09+00:00
Paths:
Modified  /trunk/madman/Rpacks/ensembldb/inst/NEWS
Just add a new NEWS

From: jotsetung <johannes.rainer@gmail.com>
Revision: 117099
Author: j.rainer
Date: 2016-05-04T09:49:02+00:00
Paths:
Modified  /trunk/madman/Rpacks/ensembldb/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensembldb/inst/NEWS
Bump version to 1.5.1

From: jotsetung <johannes.rainer@gmail.com>
Revision: 117098
Author: j.rainer
Date: 2016-05-04T09:48:54+00:00
Paths:
Modified  /trunk/madman/Rpacks/ensembldb/R/Methods.R
Modified  /trunk/madman/Rpacks/ensembldb/R/dbhelpers.R
Modified  /trunk/madman/Rpacks/ensembldb/R/select-methods.R
Modified  /trunk/madman/Rpacks/ensembldb/inst/NEWS
Modified  /trunk/madman/Rpacks/ensembldb/inst/unitTests/test_Functionality.R
Modified  /trunk/madman/Rpacks/ensembldb/inst/unitTests/test_select.R
Modified  /trunk/madman/Rpacks/ensembldb/man/EnsDb-AnnotationDbi.Rd
Modified  /trunk/madman/Rpacks/ensembldb/man/EnsDb-class.Rd
Modified  /trunk/madman/Rpacks/ensembldb/man/EnsDb-exonsBy.Rd
Modified  /trunk/madman/Rpacks/ensembldb/vignettes/ensembldb.Rmd
Modified  /trunk/madman/Rpacks/ensembldb/vignettes/ensembldb.org
Add support for column "tx_name"

o "tx_name" can now be provided with the columns argument of all
  methods. The methods return the tx_id from the database.

From: jotsetung <johannes.rainer@gmail.com>
Revision: 117095
Author: a.gutierrez-sacristan
Date: 2016-05-04T07:05:41+00:00
Paths:
Modified  /trunk/madman/Rpacks/psygenet2r/DESCRIPTION
Modified  /trunk/madman/Rpacks/psygenet2r/R/pantherGraphicCorrect.R
Modified  /trunk/madman/Rpacks/psygenet2r/R/psygenetGene.R
Modified  /trunk/madman/Rpacks/psygenet2r/man/pantherGraphic-methods.Rd
Modified  /trunk/madman/Rpacks/psygenet2r/man/psygenetGene-methods.Rd
Updated examples on psygenetGene and pantherGraphic.
Revision: 117091
Author: smyth
Date: 2016-05-04T02:49:38+00:00
Paths:
Modified  /trunk/madman/Rpacks/limma/man/roast.Rd
Minor documentation correction.
Revision: 117089
Author: smyth
Date: 2016-05-04T00:53:56+00:00
Paths:
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/R/alias2Symbol.R
Modified  /trunk/madman/Rpacks/limma/R/geneset-fry.R
Modified  /trunk/madman/Rpacks/limma/R/geneset-romer.R
Modified  /trunk/madman/Rpacks/limma/R/lmEffects.R
Modified  /trunk/madman/Rpacks/limma/R/lmfit.R
Modified  /trunk/madman/Rpacks/limma/R/squeezeVar.R
Modified  /trunk/madman/Rpacks/limma/inst/doc/changelog.txt
Modified  /trunk/madman/Rpacks/limma/man/alias2Symbol.Rd
Modified  /trunk/madman/Rpacks/limma/man/fitted.MArrayLM.Rd
 4 May 2016: limma 3.27.21

- unnecesary argument 'design' removed from fitted.MArrayLM.

- bug fix to fry() with robust=TRUE.

- bug fix to alias2Symbol() with expand.symbol=TRUE.
Revision: 117088
Author: mer36
Date: 2016-05-03T23:41:16+00:00
Paths:
Modified  /trunk/madman/Rpacks/crlmm/DESCRIPTION
Also added some new plotting options and updated version number
Revision: 117086
Author: h.zare
Date: 2016-05-03T22:52:03+00:00
Paths:
Modified  /trunk/madman/Rpacks/SamSPECTRAL/DESCRIPTION
email updated
Revision: 117085
Author: h.zare
Date: 2016-05-03T22:50:26+00:00
Paths:
Modified  /trunk/madman/Rpacks/Clomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clomial/vignettes/Clonal_decomposition_by_Clomial.Rnw
email updated
Revision: 117083
Author: hpages
Date: 2016-05-03T21:52:41+00:00
Paths:
Modified  /trunk/madman/Rpacks/BSgenome/R/available.genomes.R
fix getBSgenome() regression introduced at commit 116964
Revision: 117082
Author: d.tenenbaum
Date: 2016-05-03T21:34:18+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/R/zzz.R
set BIOC_VERSION to 3.4 (3.3 branch has been created)
Revision: 117081
Author: d.tenenbaum
Date: 2016-05-03T21:30:45+00:00
Paths:
Modified  /trunk/madman/Rpacks/ABAEnrichment/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABSSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/ACME/DESCRIPTION
Modified  /trunk/madman/Rpacks/ADaCGH2/DESCRIPTION
Modified  /trunk/madman/Rpacks/AGDEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/AIMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ALDEx2/DESCRIPTION
Modified  /trunk/madman/Rpacks/ARRmNormalization/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASEB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASGSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSET/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSIGN/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyCompatible/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyRNADegradation/DESCRIPTION
Modified  /trunk/madman/Rpacks/AgiMicroRna/DESCRIPTION
Modified  /trunk/madman/Rpacks/AllelicImbalance/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnalysisPageServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/AneuFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationForge/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationFuncs/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHub/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpressHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTV/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/AtlasRDF/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BADER/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BBCAnalyzer/DESCRIPTION
Modified  /trunk/madman/Rpacks/BCRANK/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEclear/DESCRIPTION
Modified  /trunk/madman/Rpacks/BGmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BHC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BRAIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/BSgenome/DESCRIPTION
Modified  /trunk/madman/Rpacks/BUS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BadRegionFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/BaseSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Basic4Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BasicSTARRseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BatchQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BayesPeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/BeadDataPackR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BgeeDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiGGR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiRewire/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BicARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioMVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioSeqClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biobase/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCaseStudies/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocParallel/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocStyle/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biostrings/DESCRIPTION
Modified  /trunk/madman/Rpacks/BitSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrainStars/DESCRIPTION
Modified  /trunk/madman/Rpacks/BridgeDbR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserVizDemo/DESCRIPTION
Modified  /trunk/madman/Rpacks/BubbleTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrixMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAGEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CALIB/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAMERA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAnD/DESCRIPTION
Modified  /trunk/madman/Rpacks/CFAssay/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGEN/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHcall/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHnormaliter/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHregions/DESCRIPTION
Modified  /trunk/madman/Rpacks/CHRONOS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CINdex/DESCRIPTION
Modified  /trunk/madman/Rpacks/CMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNAnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORdt/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfeeder/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfuzzy/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORode/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNPBayes/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVPanelizer/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVrd2/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CODEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/COHCAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COMPASS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CONFESS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CORREP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COSNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRISPRseek/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSSP/DESCRIPTION
Modified  /trunk/madman/Rpacks/CancerMutationAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cardinal/DESCRIPTION
Modified  /trunk/madman/Rpacks/Category/DESCRIPTION
Modified  /trunk/madman/Rpacks/CausalR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CellNOptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CexoR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChAMP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPXpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPpeakAnno/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPsim/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineOB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Chicago/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChromHeatMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClassifyR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clonality/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClusterSignificance/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoCiteStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoGAPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoRegNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CompGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/ComplexHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ConsensusClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopyNumber450k/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopywriteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CorMut/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cormotif/DESCRIPTION
Modified  /trunk/madman/Rpacks/CountClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoverageView/DESCRIPTION
Modified  /trunk/madman/Rpacks/CrispRVariants/DESCRIPTION
Modified  /trunk/madman/Rpacks/DAPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DART/DESCRIPTION
Modified  /trunk/madman/Rpacks/DBChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DChIPRep/DESCRIPTION
Modified  /trunk/madman/Rpacks/DECIPHER/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEDS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEFormats/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGreport/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq2/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEXSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcate/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRforPairs/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNABarcodes/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAshapeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOQTL/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOSE/DESCRIPTION
Modified  /trunk/madman/Rpacks/DRIMSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DSS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeMAND/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeconRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffBind/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/DirichletMultinomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/DriverNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/DrugVsDisease/DESCRIPTION
Modified  /trunk/madman/Rpacks/DupChecker/DESCRIPTION
Modified  /trunk/madman/Rpacks/DynDoc/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeqHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBarrays/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBcoexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ELBOW/DESCRIPTION
Modified  /trunk/madman/Rpacks/EMDomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENCODExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENVISIONQuery/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/EWCE/DESCRIPTION
Modified  /trunk/madman/Rpacks/EasyqpcR/DESCRIPTION
Modified  /trunk/madman/Rpacks/EmpiricalBrownsMethod/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichedHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichmentBrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExiMiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExperimentHub/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExperimentHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionAtlas/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionView/DESCRIPTION
Modified  /trunk/madman/Rpacks/FEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FGNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/FISHalyseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FRGEpistasis/DESCRIPTION
Modified  /trunk/madman/Rpacks/FamAgg/DESCRIPTION
Modified  /trunk/madman/Rpacks/FindMyFriends/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowRepositoryR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FourCSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/FunciSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENE.E/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENESIS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOmetadb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOquery/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsubmission/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEWIST/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GLAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GMRP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOFunction/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSemSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOTHiC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOsummaries/DESCRIPTION
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Modified  /trunk/madman/Rpacks/GSALightning/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEABase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEAlm/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSRI/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSReg/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSVA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GUIDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/GWASTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenVisR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneAnswers/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneBreak/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneExpressionSignature/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneMeta/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneNetworkBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneOverlap/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneRegionScan/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelectMMD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelector/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenoGAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeInfoDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicAlignments/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicInteractions/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicTuples/DESCRIPTION
Modified  /trunk/madman/Rpacks/Genominator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Glimma/DESCRIPTION
Modified  /trunk/madman/Rpacks/GlobalAncova/DESCRIPTION
Modified  /trunk/madman/Rpacks/GoogleGenomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAlignment/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GreyListChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/Guitar/DESCRIPTION
Modified  /trunk/madman/Rpacks/Gviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/HCsnip/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDF5Array/DESCRIPTION
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Modified  /trunk/madman/Rpacks/HELP/DESCRIPTION
Modified  /trunk/madman/Rpacks/HEM/DESCRIPTION
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Modified  /trunk/madman/Rpacks/HMMcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSFilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSanalyzeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSeqGenie/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harman/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harshlight/DESCRIPTION
Modified  /trunk/madman/Rpacks/Heatplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/HiTC/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertCurve/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVisGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/HybridMTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/IHW/DESCRIPTION
Modified  /trunk/madman/Rpacks/IMPCdata/DESCRIPTION
Modified  /trunk/madman/Rpacks/INPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/INSPEcT/DESCRIPTION
Modified  /trunk/madman/Rpacks/IONiseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/IPPD/DESCRIPTION
Modified  /trunk/madman/Rpacks/IRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/ISoLDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/ITALICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/IVAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/Icens/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingRetrieval/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdeoViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Imetagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/ImmuneSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/InPAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/InteractionSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/IsoGeneGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/JunctionSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/KCsmart/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGREST/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGprofile/DESCRIPTION
Modified  /trunk/madman/Rpacks/LBE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LMGene/DESCRIPTION
Modified  /trunk/madman/Rpacks/LOLA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPEadj/DESCRIPTION
Modified  /trunk/madman/Rpacks/LVSmiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LedPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/Linnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/LiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/LowMACA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LymphoSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/M3D/DESCRIPTION
Modified  /trunk/madman/Rpacks/MAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/MANOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBASED/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBAmethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBCB/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBttest/DESCRIPTION
Modified  /trunk/madman/Rpacks/MCRestimate/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDIPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDME/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEIGOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MGFM/DESCRIPTION
Modified  /trunk/madman/Rpacks/MIMOSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLInterfaces/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/MMDiff2/DESCRIPTION
Modified  /trunk/madman/Rpacks/MPFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnID/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/MVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/MantelCorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassSpecWavelet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MatrixRider/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeasurementError.cor/DESCRIPTION
Modified  /trunk/madman/Rpacks/MergeMaid/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mergeomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/Metab/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethTargetedNGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylAid/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylMix/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylSeekR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mfuzz/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiRaGE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MineICA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MinimumDistance/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mirsynergy/DESCRIPTION
Modified  /trunk/madman/Rpacks/MmPalateMiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MoPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotIV/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotifDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mulcom/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiAssayExperiment/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiDataSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiMed/DESCRIPTION
Modified  /trunk/madman/Rpacks/NCIgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/NGScopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/NOISeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/NTW/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringDiff/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringQCPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/NarrowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetPathMiner/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetSAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/NormqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/NuPoP/DESCRIPTION
Modified  /trunk/madman/Rpacks/OCplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/OGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLINgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/OSAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/OTUbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicCircos/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicsMarkeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoSimulR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OperaMate/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrderedList/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrganismDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Oscope/DESCRIPTION
Modified  /trunk/madman/Rpacks/OutlierD/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PADOG/DESCRIPTION
Modified  /trunk/madman/Rpacks/PANR/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAPi/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAnnBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCpheno/DESCRIPTION
Modified  /trunk/madman/Rpacks/PECA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/PING/DESCRIPTION
Modified  /trunk/madman/Rpacks/PLPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PREDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROMISE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROPER/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROcess/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSICQUIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/PWMEnrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/PanVizGenerator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Path2PPI/DESCRIPTION
Modified  /trunk/madman/Rpacks/PathNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/PhenStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/Polyfit/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProCoNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prostar/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProtGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProteomicsAnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/PureCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/QDNAseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUALIFIER/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUBIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuartPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuasR/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuaternaryProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/R3CPET/DESCRIPTION
Modified  /trunk/madman/Rpacks/R453Plus1Toolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/R4RNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBGL/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBioinf/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCASPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCy3/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCyjs/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCytoscape/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDAVIDWebService/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDRToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/REDseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGalaxy/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGraph2js/DESCRIPTION
Modified  /trunk/madman/Rpacks/RIPSeeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/RImmPort/DESCRIPTION
Modified  /trunk/madman/Rpacks/RLMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RMassBank/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNASeqPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAinteract/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAither/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAprobR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROntoTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/RPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RRHO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RSVSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGAToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTN/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTopper/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVcorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVnormalize/DESCRIPTION
Modified  /trunk/madman/Rpacks/RamiGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RankProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/RareVariantVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/RbcBook1/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rbowtie/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcade/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rchemcpp/DESCRIPTION
Modified  /trunk/madman/Rpacks/RchyOptimyx/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcpi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rdisop/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReQON/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReactomePA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReadqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RedeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/Repitools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReportingTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rgraphviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rhtslib/DESCRIPTION
Modified  /trunk/madman/Rpacks/RiboProfiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/Ringo/DESCRIPTION
Modified  /trunk/madman/Rpacks/Risa/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rmagpie/DESCRIPTION
Modified  /trunk/madman/Rpacks/RmiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnaSeqSampleSize/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rnits/DESCRIPTION
Modified  /trunk/madman/Rpacks/Roleswitch/DESCRIPTION
Modified  /trunk/madman/Rpacks/RpsiXML/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsamtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsubread/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rtreemix/DESCRIPTION
Modified  /trunk/madman/Rpacks/S4Vectors/DESCRIPTION
Modified  /trunk/madman/Rpacks/SAGx/DESCRIPTION
Modified  /trunk/madman/Rpacks/SANTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SBMLR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SC3/DESCRIPTION
Modified  /trunk/madman/Rpacks/SCAN.UPC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SELEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/SEPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SGSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/SICtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/SISPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLGI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMITE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNAGEE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPRelate/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPchip/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPhood/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPIA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SQUADD/DESCRIPTION
Modified  /trunk/madman/Rpacks/SRAdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SSPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/STAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/STATegRa/DESCRIPTION
Modified  /trunk/madman/Rpacks/STRINGdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SVM2CRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SWATH2stats/DESCRIPTION
Modified  /trunk/madman/Rpacks/SamSPECTRAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/ScISI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SemDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqVarTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ShortRead/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigFuge/DESCRIPTION
Modified  /trunk/madman/Rpacks/SimBindProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/SomaticSignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpacePAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpeCond/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpidermiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SplicingGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/Starr/DESCRIPTION
Modified  /trunk/madman/Rpacks/Streamer/DESCRIPTION
Modified  /trunk/madman/Rpacks/SummarizedExperiment/DESCRIPTION
Modified  /trunk/madman/Rpacks/Sushi/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwathXtend/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwimR/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCGAbiolinks/DESCRIPTION
Modified  /trunk/madman/Rpacks/TDARACNE/DESCRIPTION
Modified  /trunk/madman/Rpacks/TEQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TFBSTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/TIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/TRONCO/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSSi/DESCRIPTION
Modified  /trunk/madman/Rpacks/TarSeqQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetSearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/TitanCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ToPASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/TransView/DESCRIPTION
Modified  /trunk/madman/Rpacks/TurboNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/TypeInfo/DESCRIPTION
Modified  /trunk/madman/Rpacks/UNDO/DESCRIPTION
Modified  /trunk/madman/Rpacks/UniProt.ws/DESCRIPTION
Modified  /trunk/madman/Rpacks/Uniquorn/DESCRIPTION
Modified  /trunk/madman/Rpacks/VanillaICE/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantAnnotation/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantFiltering/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Vega/DESCRIPTION
Modified  /trunk/madman/Rpacks/VegaMC/DESCRIPTION
Modified  /trunk/madman/Rpacks/XBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/XDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/XVector/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Base/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Classif/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Core/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Preproc/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Reporting/DESCRIPTION
Modified  /trunk/madman/Rpacks/aCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/acde/DESCRIPTION
Modified  /trunk/madman/Rpacks/adSplit/DESCRIPTION
Modified  /trunk/madman/Rpacks/affxparser/DESCRIPTION
Modified  /trunk/madman/Rpacks/affy/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyContam/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyILM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPLM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPara/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyQCReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycoretools/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyio/DESCRIPTION
Modified  /trunk/madman/Rpacks/affylmGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/affypdnn/DESCRIPTION
Modified  /trunk/madman/Rpacks/agilp/DESCRIPTION
Modified  /trunk/madman/Rpacks/alsace/DESCRIPTION
Modified  /trunk/madman/Rpacks/altcdfenvs/DESCRIPTION
Modified  /trunk/madman/Rpacks/ampliQueso/DESCRIPTION
Modified  /trunk/madman/Rpacks/annaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/annmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotate/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotationTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/anota/DESCRIPTION
Modified  /trunk/madman/Rpacks/antiProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/apComplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/aroma.light/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayMvout/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQuality/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQualityMetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/attract/DESCRIPTION
Modified  /trunk/madman/Rpacks/bacon/DESCRIPTION
Modified  /trunk/madman/Rpacks/ballgown/DESCRIPTION
Modified  /trunk/madman/Rpacks/bamsignals/DESCRIPTION
Modified  /trunk/madman/Rpacks/baySeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarraySNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/betr/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgafun/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgx/DESCRIPTION
Modified  /trunk/madman/Rpacks/bigmemoryExtras/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioassayR/DESCRIPTION
Modified  /trunk/madman/Rpacks/biobroom/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocViews/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomaRt/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomformat/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomvRCNS/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosigner/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosvd/DESCRIPTION
Modified  /trunk/madman/Rpacks/biovizBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/birta/DESCRIPTION
Modified  /trunk/madman/Rpacks/birte/DESCRIPTION
Modified  /trunk/madman/Rpacks/blima/DESCRIPTION
Modified  /trunk/madman/Rpacks/bridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/bsseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/bumphunter/DESCRIPTION
Modified  /trunk/madman/Rpacks/caOmicsV/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/cancerclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/casper/DESCRIPTION
Modified  /trunk/madman/Rpacks/categoryCompare/DESCRIPTION
Modified  /trunk/madman/Rpacks/ccrepe/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellGrowth/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellHTS2/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellity/DESCRIPTION
Modified  /trunk/madman/Rpacks/cghMCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/charm/DESCRIPTION
Modified  /trunk/madman/Rpacks/chimera/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipenrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/chopsticks/DESCRIPTION
Modified  /trunk/madman/Rpacks/chroGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromDraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/cisPath/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleanUpdTSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/clippda/DESCRIPTION
Modified  /trunk/madman/Rpacks/clipper/DESCRIPTION
Modified  /trunk/madman/Rpacks/clonotypeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/clst/DESCRIPTION
Modified  /trunk/madman/Rpacks/clstutils/DESCRIPTION
Modified  /trunk/madman/Rpacks/clustComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterProfiler/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterStab/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.mops/DESCRIPTION
Modified  /trunk/madman/Rpacks/cnvGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/coGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/coMET/DESCRIPTION
Modified  /trunk/madman/Rpacks/coRNAi/DESCRIPTION
Modified  /trunk/madman/Rpacks/cobindR/DESCRIPTION
Modified  /trunk/madman/Rpacks/codelink/DESCRIPTION
Modified  /trunk/madman/Rpacks/cogena/DESCRIPTION
Modified  /trunk/madman/Rpacks/compEpiTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/compcodeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/consensusSeekeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/contiBAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/conumee/DESCRIPTION
Modified  /trunk/madman/Rpacks/convert/DESCRIPTION
Modified  /trunk/madman/Rpacks/copa/DESCRIPTION
Modified  /trunk/madman/Rpacks/copynumber/DESCRIPTION
Modified  /trunk/madman/Rpacks/cosmiq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cpvSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/cqn/DESCRIPTION
Modified  /trunk/madman/Rpacks/crlmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/csaw/DESCRIPTION
Modified  /trunk/madman/Rpacks/ctc/DESCRIPTION
Modified  /trunk/madman/Rpacks/cummeRbund/DESCRIPTION
Modified  /trunk/madman/Rpacks/customProDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/cycle/DESCRIPTION
Modified  /trunk/madman/Rpacks/cytofkit/DESCRIPTION
Modified  /trunk/madman/Rpacks/daMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/dada2/DESCRIPTION
Modified  /trunk/madman/Rpacks/dagLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/dcGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddCt/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/debrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/deepSNV/DESCRIPTION
Modified  /trunk/madman/Rpacks/deltaGseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderHelper/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/destiny/DESCRIPTION
Modified  /trunk/madman/Rpacks/dexus/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffGeneAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffHic/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diggit/DESCRIPTION
Modified  /trunk/madman/Rpacks/dks/DESCRIPTION
Modified  /trunk/madman/Rpacks/domainsignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/doppelgangR/DESCRIPTION
Modified  /trunk/madman/Rpacks/dualKS/DESCRIPTION
Modified  /trunk/madman/Rpacks/dupRadar/DESCRIPTION
Modified  /trunk/madman/Rpacks/dyebias/DESCRIPTION
Modified  /trunk/madman/Rpacks/easyRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ecolitk/DESCRIPTION
Modified  /trunk/madman/Rpacks/edge/DESCRIPTION
Modified  /trunk/madman/Rpacks/edgeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eisa/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensemblVEP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensembldb/DESCRIPTION
Modified  /trunk/madman/Rpacks/epigenomix/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizr/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrData/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
Modified  /trunk/madman/Rpacks/erccdashboard/DESCRIPTION
Modified  /trunk/madman/Rpacks/erma/DESCRIPTION
Modified  /trunk/madman/Rpacks/eudysbiome/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomeCopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomePeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/explorase/DESCRIPTION
Modified  /trunk/madman/Rpacks/fCI/DESCRIPTION
Modified  /trunk/madman/Rpacks/fabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/facopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/factDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastLiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/fdrame/DESCRIPTION
Modified  /trunk/madman/Rpacks/ffpe/DESCRIPTION
Modified  /trunk/madman/Rpacks/flagme/DESCRIPTION
Modified  /trunk/madman/Rpacks/flipflop/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowAI/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBin/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCHIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCL/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCyBar/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowDensity/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFit/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMatch/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMeans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMerge/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPlots/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQB/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowTrans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowType/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowUtils/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowVS/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowWorkspace/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowcatchR/DESCRIPTION
Modified  /trunk/madman/Rpacks/fmcsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/focalCall/DESCRIPTION
Modified  /trunk/madman/Rpacks/frma/DESCRIPTION
Modified  /trunk/madman/Rpacks/frmaTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAPWeb/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaga/DESCRIPTION
Modified  /trunk/madman/Rpacks/gage/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaggle/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaia/DESCRIPTION
Modified  /trunk/madman/Rpacks/garfield/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaucho/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcatest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcrma/DESCRIPTION
Modified  /trunk/madman/Rpacks/gdsfmt/DESCRIPTION
Modified  /trunk/madman/Rpacks/geNetClassifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/geecc/DESCRIPTION
Modified  /trunk/madman/Rpacks/genArise/DESCRIPTION
Modified  /trunk/madman/Rpacks/genbankr/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRecommender/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRxCluster/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefu/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneplotter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomation/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomeIntervals/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomes/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoset/DESCRIPTION
Modified  /trunk/madman/Rpacks/genotypeeval/DESCRIPTION
Modified  /trunk/madman/Rpacks/genphen/DESCRIPTION
Modified  /trunk/madman/Rpacks/gespeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggbio/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggcyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggtree/DESCRIPTION
Modified  /trunk/madman/Rpacks/girafe/DESCRIPTION
Modified  /trunk/madman/Rpacks/globalSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/globaltest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gmapR/DESCRIPTION
Modified  /trunk/madman/Rpacks/goProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/goTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/goseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/gpls/DESCRIPTION
Modified  /trunk/madman/Rpacks/gprege/DESCRIPTION
Modified  /trunk/madman/Rpacks/graph/DESCRIPTION
Modified  /trunk/madman/Rpacks/graphite/DESCRIPTION
Modified  /trunk/madman/Rpacks/groHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/gtrellis/DESCRIPTION
Modified  /trunk/madman/Rpacks/gwascat/DESCRIPTION
Modified  /trunk/madman/Rpacks/h5vc/DESCRIPTION
Modified  /trunk/madman/Rpacks/hapFabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiAnnotator/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiReadsProcessor/DESCRIPTION
Modified  /trunk/madman/Rpacks/hierGWAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/hopach/DESCRIPTION
Modified  /trunk/madman/Rpacks/hpar/DESCRIPTION
Modified  /trunk/madman/Rpacks/htSeqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/hyperdraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/hypergraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/iASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBBiG/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBMQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCOBRA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/iChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/iClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/iGC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ibh/DESCRIPTION
Modified  /trunk/madman/Rpacks/idiogram/DESCRIPTION
Modified  /trunk/madman/Rpacks/illuminaio/DESCRIPTION
Modified  /trunk/madman/Rpacks/imageHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/immunoClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/impute/DESCRIPTION
Modified  /trunk/madman/Rpacks/intansv/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplay/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplayBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/inveRsion/DESCRIPTION
Modified  /trunk/madman/Rpacks/iontree/DESCRIPTION
Modified  /trunk/madman/Rpacks/isobar/DESCRIPTION
Modified  /trunk/madman/Rpacks/isomiRs/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMAsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/joda/DESCRIPTION
Modified  /trunk/madman/Rpacks/kebabs/DESCRIPTION
Modified  /trunk/madman/Rpacks/keggorthology/DESCRIPTION
Modified  /trunk/madman/Rpacks/kimod/DESCRIPTION
Modified  /trunk/madman/Rpacks/lapmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/ldblock/DESCRIPTION
Modified  /trunk/madman/Rpacks/les/DESCRIPTION
Modified  /trunk/madman/Rpacks/lfa/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limmaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/lmdme/DESCRIPTION
Modified  /trunk/madman/Rpacks/logicFS/DESCRIPTION
Modified  /trunk/madman/Rpacks/logitT/DESCRIPTION
Modified  /trunk/madman/Rpacks/lol/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpsymphony/DESCRIPTION
Modified  /trunk/madman/Rpacks/lumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mAPKL/DESCRIPTION
Modified  /trunk/madman/Rpacks/mBPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/mQTL.NMR/DESCRIPTION
Modified  /trunk/madman/Rpacks/maCorrPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/maPredictDSC/DESCRIPTION
Modified  /trunk/madman/Rpacks/maSigPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/maanova/DESCRIPTION
Modified  /trunk/madman/Rpacks/macat/DESCRIPTION
Modified  /trunk/madman/Rpacks/made4/DESCRIPTION
Modified  /trunk/madman/Rpacks/maigesPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/makecdfenv/DESCRIPTION
Modified  /trunk/madman/Rpacks/manta/DESCRIPTION
Modified  /trunk/madman/Rpacks/marray/DESCRIPTION
Modified  /trunk/madman/Rpacks/maskBAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/massiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/matchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/mcaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/meshr/DESCRIPTION
Modified  /trunk/madman/Rpacks/messina/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaCCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metabomxtr/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metahdep/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/methVisual/DESCRIPTION
Modified  /trunk/madman/Rpacks/methyAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylMnM/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylPipe/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRLAB/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAmeConverter/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNApath/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAtap/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/microRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/minet/DESCRIPTION
Modified  /trunk/madman/Rpacks/minfi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mirIntegrator/DESCRIPTION
Modified  /trunk/madman/Rpacks/missMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/mitoODE/DESCRIPTION
Modified  /trunk/madman/Rpacks/mmnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/mogsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/monocle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mosaics/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifRG/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifStack/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifbreakR/DESCRIPTION
Modified  /trunk/madman/Rpacks/msa/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsEDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsTests/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiscan/DESCRIPTION
Modified  /trunk/madman/Rpacks/multtest/DESCRIPTION
Modified  /trunk/madman/Rpacks/muscle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mvGST/DESCRIPTION
Modified  /trunk/madman/Rpacks/mygene/DESCRIPTION
Modified  /trunk/madman/Rpacks/myvariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzID/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ncdfFlow/DESCRIPTION
Modified  /trunk/madman/Rpacks/nem/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbenchmark/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbiov/DESCRIPTION
Modified  /trunk/madman/Rpacks/nethet/DESCRIPTION
Modified  /trunk/madman/Rpacks/netresponse/DESCRIPTION
Modified  /trunk/madman/Rpacks/networkBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nnNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/nondetects/DESCRIPTION
Modified  /trunk/madman/Rpacks/normalize450K/DESCRIPTION
Modified  /trunk/madman/Rpacks/npGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleR/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleoSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/nudge/DESCRIPTION
Modified  /trunk/madman/Rpacks/occugene/DESCRIPTION
Modified  /trunk/madman/Rpacks/odseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligo/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligoClasses/DESCRIPTION
Modified  /trunk/madman/Rpacks/omicade4/DESCRIPTION
Modified  /trunk/madman/Rpacks/oneChannelGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/ontoCAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/openCyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/oposSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/oppar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRoloc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRolocGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/paircompviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/panp/DESCRIPTION
Modified  /trunk/madman/Rpacks/parglms/DESCRIPTION
Modified  /trunk/madman/Rpacks/parody/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathRender/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathVar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathview/DESCRIPTION
Modified  /trunk/madman/Rpacks/paxtoolsr/DESCRIPTION
Modified  /trunk/madman/Rpacks/pbcmc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaGoPromoter/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcot2/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdInfoBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdmclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepXMLTab/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/phyloseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/piano/DESCRIPTION
Modified  /trunk/madman/Rpacks/pickgene/DESCRIPTION
Modified  /trunk/madman/Rpacks/pint/DESCRIPTION
Modified  /trunk/madman/Rpacks/pkgDepTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/plateCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/plethy/DESCRIPTION
Modified  /trunk/madman/Rpacks/plgem/DESCRIPTION
Modified  /trunk/madman/Rpacks/plier/DESCRIPTION
Modified  /trunk/madman/Rpacks/plrs/DESCRIPTION
Modified  /trunk/madman/Rpacks/plw/DESCRIPTION
Modified  /trunk/madman/Rpacks/pmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/podkat/DESCRIPTION
Modified  /trunk/madman/Rpacks/polyester/DESCRIPTION
Modified  /trunk/madman/Rpacks/ppiStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/pqsfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/prada/DESCRIPTION
Modified  /trunk/madman/Rpacks/prebs/DESCRIPTION
Modified  /trunk/madman/Rpacks/predictionet/DESCRIPTION
Modified  /trunk/madman/Rpacks/preprocessCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/proBAMr/DESCRIPTION
Modified  /trunk/madman/Rpacks/procoil/DESCRIPTION
Modified  /trunk/madman/Rpacks/profileScoreDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/prot2D/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteinProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteoQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/psygenet2r/DESCRIPTION
Modified  /trunk/madman/Rpacks/puma/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvac/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvca/DESCRIPTION
Modified  /trunk/madman/Rpacks/pwOmics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qcmetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpcrNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/qrqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantro/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantsmooth/DESCRIPTION
Modified  /trunk/madman/Rpacks/qusage/DESCRIPTION
Modified  /trunk/madman/Rpacks/qvalue/DESCRIPTION
Modified  /trunk/madman/Rpacks/r3Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/rBiopaxParser/DESCRIPTION
Modified  /trunk/madman/Rpacks/rCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGADEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGREAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rHVDM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rRDP/DESCRIPTION
Modified  /trunk/madman/Rpacks/rSFFreader/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRMui/DESCRIPTION
Modified  /trunk/madman/Rpacks/rain/DESCRIPTION
Modified  /trunk/madman/Rpacks/rama/DESCRIPTION
Modified  /trunk/madman/Rpacks/randPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/rbsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/rcellminer/DESCRIPTION
Modified  /trunk/madman/Rpacks/reb/DESCRIPTION
Modified  /trunk/madman/Rpacks/recoup/DESCRIPTION
Modified  /trunk/madman/Rpacks/regionReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/regioneR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rfPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/rgsepd/DESCRIPTION
Modified  /trunk/madman/Rpacks/rhdf5/DESCRIPTION
Modified  /trunk/madman/Rpacks/riboSeqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaSeqMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaseqcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/roar/DESCRIPTION
Modified  /trunk/madman/Rpacks/rols/DESCRIPTION
Modified  /trunk/madman/Rpacks/ropls/DESCRIPTION
Modified  /trunk/madman/Rpacks/rpx/DESCRIPTION
Modified  /trunk/madman/Rpacks/rqubic/DESCRIPTION
Modified  /trunk/madman/Rpacks/rsbml/DESCRIPTION
Modified  /trunk/madman/Rpacks/rtracklayer/DESCRIPTION
Modified  /trunk/madman/Rpacks/sRAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/sSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/safe/DESCRIPTION
Modified  /trunk/madman/Rpacks/sagenhaft/DESCRIPTION
Modified  /trunk/madman/Rpacks/sangerseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/sapFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/saps/DESCRIPTION
Modified  /trunk/madman/Rpacks/savR/DESCRIPTION
Modified  /trunk/madman/Rpacks/scater/DESCRIPTION
Modified  /trunk/madman/Rpacks/scde/DESCRIPTION
Modified  /trunk/madman/Rpacks/scran/DESCRIPTION
Modified  /trunk/madman/Rpacks/scsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/segmentSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/seq2pathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqPattern/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqbias/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqplots/DESCRIPTION
Modified  /trunk/madman/Rpacks/sevenbridges/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigPathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/siggenes/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigsquared/DESCRIPTION
Modified  /trunk/madman/Rpacks/similaRpeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/simpleaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/simulatorZ/DESCRIPTION
Modified  /trunk/madman/Rpacks/sincell/DESCRIPTION
Modified  /trunk/madman/Rpacks/sizepower/DESCRIPTION
Modified  /trunk/madman/Rpacks/skewr/DESCRIPTION
Modified  /trunk/madman/Rpacks/snapCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/snm/DESCRIPTION
Modified  /trunk/madman/Rpacks/snpStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/soGGi/DESCRIPTION
Modified  /trunk/madman/Rpacks/specL/DESCRIPTION
Modified  /trunk/madman/Rpacks/spikeLI/DESCRIPTION
Modified  /trunk/madman/Rpacks/spkTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceSites/DESCRIPTION
Modified  /trunk/madman/Rpacks/splicegear/DESCRIPTION
Modified  /trunk/madman/Rpacks/splineTimeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/splots/DESCRIPTION
Modified  /trunk/madman/Rpacks/spotSegmentation/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscore/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscu/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/staRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepwiseCM/DESCRIPTION
Modified  /trunk/madman/Rpacks/subSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/supraHex/DESCRIPTION
Modified  /trunk/madman/Rpacks/survcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/sva/DESCRIPTION
Modified  /trunk/madman/Rpacks/switchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/synapter/DESCRIPTION
Modified  /trunk/madman/Rpacks/synlet/DESCRIPTION
Modified  /trunk/madman/Rpacks/systemPipeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/tRanslatome/DESCRIPTION
Modified  /trunk/madman/Rpacks/ternarynet/DESCRIPTION
Modified  /trunk/madman/Rpacks/tigre/DESCRIPTION
Modified  /trunk/madman/Rpacks/tilingArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/timecourse/DESCRIPTION
Modified  /trunk/madman/Rpacks/tkWidgets/DESCRIPTION
Modified  /trunk/madman/Rpacks/tofsims/DESCRIPTION
Modified  /trunk/madman/Rpacks/topGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/trackViewer/DESCRIPTION
Modified  /trunk/madman/Rpacks/tracktables/DESCRIPTION
Modified  /trunk/madman/Rpacks/transcriptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/traseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/triform/DESCRIPTION
Modified  /trunk/madman/Rpacks/trigger/DESCRIPTION
Modified  /trunk/madman/Rpacks/trio/DESCRIPTION
Modified  /trunk/madman/Rpacks/triplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/tspair/DESCRIPTION
Modified  /trunk/madman/Rpacks/tweeDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/twilight/DESCRIPTION
Modified  /trunk/madman/Rpacks/tximport/DESCRIPTION
Modified  /trunk/madman/Rpacks/unifiedWMWqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/variancePartition/DESCRIPTION
Modified  /trunk/madman/Rpacks/vbmp/DESCRIPTION
Modified  /trunk/madman/Rpacks/viper/DESCRIPTION
Modified  /trunk/madman/Rpacks/vsn/DESCRIPTION
Modified  /trunk/madman/Rpacks/vtpnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/wateRmelon/DESCRIPTION
Modified  /trunk/madman/Rpacks/wavClusteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/waveTiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/weaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/webbioc/DESCRIPTION
Modified  /trunk/madman/Rpacks/widgetTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/xcms/DESCRIPTION
Modified  /trunk/madman/Rpacks/xmapbridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/xps/DESCRIPTION
Modified  /trunk/madman/Rpacks/yaqcaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/zlibbioc/DESCRIPTION
bump version after creating 3.3 branch
Revision: 117079
Author: d.tenenbaum
Date: 2016-05-03T21:20:19+00:00
Paths:
Modified  /trunk/madman/Rpacks/ABAEnrichment/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABSSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ABarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/ACME/DESCRIPTION
Modified  /trunk/madman/Rpacks/ADaCGH2/DESCRIPTION
Modified  /trunk/madman/Rpacks/AGDEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/AIMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ALDEx2/DESCRIPTION
Modified  /trunk/madman/Rpacks/ARRmNormalization/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASEB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASGSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSET/DESCRIPTION
Modified  /trunk/madman/Rpacks/ASSIGN/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyCompatible/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyRNADegradation/DESCRIPTION
Modified  /trunk/madman/Rpacks/AffyTiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/AgiMicroRna/DESCRIPTION
Modified  /trunk/madman/Rpacks/AllelicImbalance/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnalysisPageServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/AneuFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationForge/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationFuncs/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHub/DESCRIPTION
Modified  /trunk/madman/Rpacks/AnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayExpressHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTV/DESCRIPTION
Modified  /trunk/madman/Rpacks/ArrayTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/AtlasRDF/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BADER/DESCRIPTION
Modified  /trunk/madman/Rpacks/BAGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BBCAnalyzer/DESCRIPTION
Modified  /trunk/madman/Rpacks/BCRANK/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/BEclear/DESCRIPTION
Modified  /trunk/madman/Rpacks/BGmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BHC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BRAIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/BSgenome/DESCRIPTION
Modified  /trunk/madman/Rpacks/BUS/DESCRIPTION
Modified  /trunk/madman/Rpacks/BadRegionFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/BaseSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Basic4Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BasicSTARRseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BatchQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BayesPeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/BeadDataPackR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BgeeDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiGGR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiRewire/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BicARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioMVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BioSeqClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biobase/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCaseStudies/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocParallel/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocStyle/DESCRIPTION
Modified  /trunk/madman/Rpacks/Biostrings/DESCRIPTION
Modified  /trunk/madman/Rpacks/BitSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrainStars/DESCRIPTION
Modified  /trunk/madman/Rpacks/BridgeDbR/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/BrowserVizDemo/DESCRIPTION
Modified  /trunk/madman/Rpacks/BubbleTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrix/DESCRIPTION
Modified  /trunk/madman/Rpacks/BufferedMatrixMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAGEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CALIB/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAMERA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CAnD/DESCRIPTION
Modified  /trunk/madman/Rpacks/CFAssay/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGEN/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHcall/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHnormaliter/DESCRIPTION
Modified  /trunk/madman/Rpacks/CGHregions/DESCRIPTION
Modified  /trunk/madman/Rpacks/CHRONOS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CINdex/DESCRIPTION
Modified  /trunk/madman/Rpacks/CMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNAnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNEr/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORdt/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfeeder/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORfuzzy/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNORode/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNPBayes/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVPanelizer/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVrd2/DESCRIPTION
Modified  /trunk/madman/Rpacks/CNVtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/CODEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/COHCAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COMPASS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CONFESS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CORREP/DESCRIPTION
Modified  /trunk/madman/Rpacks/COSNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRISPRseek/DESCRIPTION
Modified  /trunk/madman/Rpacks/CRImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CSSP/DESCRIPTION
Modified  /trunk/madman/Rpacks/CancerMutationAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cardinal/DESCRIPTION
Modified  /trunk/madman/Rpacks/Category/DESCRIPTION
Modified  /trunk/madman/Rpacks/CausalR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CellNOptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CexoR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChAMP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPXpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPpeakAnno/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChIPsim/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineOB/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChemmineR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Chicago/DESCRIPTION
Modified  /trunk/madman/Rpacks/ChromHeatMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClassifyR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/Clonality/DESCRIPTION
Modified  /trunk/madman/Rpacks/ClusterSignificance/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoCiteStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoGAPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoRegNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/CompGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/ComplexHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/ConsensusClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopyNumber450k/DESCRIPTION
Modified  /trunk/madman/Rpacks/CopywriteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/CorMut/DESCRIPTION
Modified  /trunk/madman/Rpacks/Cormotif/DESCRIPTION
Modified  /trunk/madman/Rpacks/CountClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/CoverageView/DESCRIPTION
Modified  /trunk/madman/Rpacks/CrispRVariants/DESCRIPTION
Modified  /trunk/madman/Rpacks/DAPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DART/DESCRIPTION
Modified  /trunk/madman/Rpacks/DASiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DAVIDQuery/DESCRIPTION
Modified  /trunk/madman/Rpacks/DBChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DChIPRep/DESCRIPTION
Modified  /trunk/madman/Rpacks/DECIPHER/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEDS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEFormats/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGreport/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEGseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DESeq2/DESCRIPTION
Modified  /trunk/madman/Rpacks/DEXSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRcate/DESCRIPTION
Modified  /trunk/madman/Rpacks/DMRforPairs/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNABarcodes/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/DNAshapeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOQTL/DESCRIPTION
Modified  /trunk/madman/Rpacks/DOSE/DESCRIPTION
Modified  /trunk/madman/Rpacks/DRIMSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DSS/DESCRIPTION
Modified  /trunk/madman/Rpacks/DTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeMAND/DESCRIPTION
Modified  /trunk/madman/Rpacks/DeconRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffBind/DESCRIPTION
Modified  /trunk/madman/Rpacks/DiffLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/DirichletMultinomial/DESCRIPTION
Modified  /trunk/madman/Rpacks/DriverNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/DrugVsDisease/DESCRIPTION
Modified  /trunk/madman/Rpacks/DupChecker/DESCRIPTION
Modified  /trunk/madman/Rpacks/DynDoc/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBImage/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBSeqHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBarrays/DESCRIPTION
Modified  /trunk/madman/Rpacks/EBcoexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/EDDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/EGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ELBOW/DESCRIPTION
Modified  /trunk/madman/Rpacks/ELMER/DESCRIPTION
Modified  /trunk/madman/Rpacks/EMDomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENCODExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENVISIONQuery/DESCRIPTION
Modified  /trunk/madman/Rpacks/ENmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/EWCE/DESCRIPTION
Modified  /trunk/madman/Rpacks/EasyqpcR/DESCRIPTION
Modified  /trunk/madman/Rpacks/EmpiricalBrownsMethod/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichedHeatmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/EnrichmentBrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExiMiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionAtlas/DESCRIPTION
Modified  /trunk/madman/Rpacks/ExpressionView/DESCRIPTION
Modified  /trunk/madman/Rpacks/FEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FGNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/FISHalyseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FRGEpistasis/DESCRIPTION
Modified  /trunk/madman/Rpacks/FamAgg/DESCRIPTION
Modified  /trunk/madman/Rpacks/FindMyFriends/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowRepositoryR/DESCRIPTION
Modified  /trunk/madman/Rpacks/FlowSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/FourCSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/FunciSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENE.E/DESCRIPTION
Modified  /trunk/madman/Rpacks/GENESIS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOmetadb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOquery/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEOsubmission/DESCRIPTION
Modified  /trunk/madman/Rpacks/GEWIST/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GGtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GLAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GMRP/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOFunction/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSemSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOTHiC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOexpress/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/GOsummaries/DESCRIPTION
Modified  /trunk/madman/Rpacks/GRENITS/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSALightning/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEABase/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSEAlm/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSRI/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSReg/DESCRIPTION
Modified  /trunk/madman/Rpacks/GSVA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GUIDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/GWASTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenVisR/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneAnswers/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneBreak/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneExpressionSignature/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneMeta/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneNetworkBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneOverlap/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneRegionScan/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelectMMD/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneSelector/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/GeneticsPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenoGAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenoView/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomeInfoDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicAlignments/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicFiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicInteractions/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/GenomicTuples/DESCRIPTION
Modified  /trunk/madman/Rpacks/Genominator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Glimma/DESCRIPTION
Modified  /trunk/madman/Rpacks/GlobalAncova/DESCRIPTION
Modified  /trunk/madman/Rpacks/GoogleGenomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphAlignment/DESCRIPTION
Modified  /trunk/madman/Rpacks/GraphPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/GreyListChIP/DESCRIPTION
Modified  /trunk/madman/Rpacks/Guitar/DESCRIPTION
Modified  /trunk/madman/Rpacks/Gviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/HCsnip/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDF5Array/DESCRIPTION
Modified  /trunk/madman/Rpacks/HDTD/DESCRIPTION
Modified  /trunk/madman/Rpacks/HELP/DESCRIPTION
Modified  /trunk/madman/Rpacks/HEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/HIBAG/DESCRIPTION
Modified  /trunk/madman/Rpacks/HMMcopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSFilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSanalyzeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTSeqGenie/DESCRIPTION
Modified  /trunk/madman/Rpacks/HTqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harman/DESCRIPTION
Modified  /trunk/madman/Rpacks/Harshlight/DESCRIPTION
Modified  /trunk/madman/Rpacks/Heatplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/HiTC/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertCurve/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/HilbertVisGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/HybridMTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/IHW/DESCRIPTION
Modified  /trunk/madman/Rpacks/IMPCdata/DESCRIPTION
Modified  /trunk/madman/Rpacks/INPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/INSPEcT/DESCRIPTION
Modified  /trunk/madman/Rpacks/IONiseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/IPPD/DESCRIPTION
Modified  /trunk/madman/Rpacks/IRanges/DESCRIPTION
Modified  /trunk/madman/Rpacks/ISoLDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/ITALICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/IVAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/Icens/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdMappingRetrieval/DESCRIPTION
Modified  /trunk/madman/Rpacks/IdeoViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Imetagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/ImmuneSpaceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/InPAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/InteractionSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/IsoGeneGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/JunctionSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/KCsmart/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGREST/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/KEGGprofile/DESCRIPTION
Modified  /trunk/madman/Rpacks/LBE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LMGene/DESCRIPTION
Modified  /trunk/madman/Rpacks/LOLA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/LPEadj/DESCRIPTION
Modified  /trunk/madman/Rpacks/LVSmiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LedPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/Linnorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/LiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/LowMACA/DESCRIPTION
Modified  /trunk/madman/Rpacks/LymphoSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/M3D/DESCRIPTION
Modified  /trunk/madman/Rpacks/MAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/MANOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBASED/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBAmethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBCB/DESCRIPTION
Modified  /trunk/madman/Rpacks/MBttest/DESCRIPTION
Modified  /trunk/madman/Rpacks/MCRestimate/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDIPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEDME/DESCRIPTION
Modified  /trunk/madman/Rpacks/MEIGOR/DESCRIPTION
Modified  /trunk/madman/Rpacks/MGFM/DESCRIPTION
Modified  /trunk/madman/Rpacks/MIMOSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLInterfaces/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MLSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/MMDiff/DESCRIPTION
Modified  /trunk/madman/Rpacks/MMDiff2/DESCRIPTION
Modified  /trunk/madman/Rpacks/MPFE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSGFplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnID/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/MVCClass/DESCRIPTION
Modified  /trunk/madman/Rpacks/MantelCorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/MassSpecWavelet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MatrixRider/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeSHSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/MeasurementError.cor/DESCRIPTION
Modified  /trunk/madman/Rpacks/MergeMaid/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mergeomics/DESCRIPTION
Modified  /trunk/madman/Rpacks/Metab/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethPed/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethTargetedNGS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylAid/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylMix/DESCRIPTION
Modified  /trunk/madman/Rpacks/MethylSeekR/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mfuzz/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/MiRaGE/DESCRIPTION
Modified  /trunk/madman/Rpacks/MineICA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MinimumDistance/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mirsynergy/DESCRIPTION
Modified  /trunk/madman/Rpacks/MmPalateMiRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/MoPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotIV/DESCRIPTION
Modified  /trunk/madman/Rpacks/MotifDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/Mulcom/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiDataSet/DESCRIPTION
Modified  /trunk/madman/Rpacks/MultiMed/DESCRIPTION
Modified  /trunk/madman/Rpacks/NCIgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/NGScopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/NOISeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/NTW/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringDiff/DESCRIPTION
Modified  /trunk/madman/Rpacks/NanoStringQCPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/NarrowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetPathMiner/DESCRIPTION
Modified  /trunk/madman/Rpacks/NetSAM/DESCRIPTION
Modified  /trunk/madman/Rpacks/NormqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/NuPoP/DESCRIPTION
Modified  /trunk/madman/Rpacks/OCplus/DESCRIPTION
Modified  /trunk/madman/Rpacks/OGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/OLINgui/DESCRIPTION
Modified  /trunk/madman/Rpacks/OSAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/OTUbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicCircos/DESCRIPTION
Modified  /trunk/madman/Rpacks/OmicsMarkeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/OncoSimulR/DESCRIPTION
Modified  /trunk/madman/Rpacks/OperaMate/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrderedList/DESCRIPTION
Modified  /trunk/madman/Rpacks/OrganismDbi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Oscope/DESCRIPTION
Modified  /trunk/madman/Rpacks/OutlierD/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PADOG/DESCRIPTION
Modified  /trunk/madman/Rpacks/PANR/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAPi/DESCRIPTION
Modified  /trunk/madman/Rpacks/PAnnBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/PCpheno/DESCRIPTION
Modified  /trunk/madman/Rpacks/PECA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PICS/DESCRIPTION
Modified  /trunk/madman/Rpacks/PING/DESCRIPTION
Modified  /trunk/madman/Rpacks/PLPE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PREDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROMISE/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROPER/DESCRIPTION
Modified  /trunk/madman/Rpacks/PROcess/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/PSICQUIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/PWMEnrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/PanVizGenerator/DESCRIPTION
Modified  /trunk/madman/Rpacks/Path2PPI/DESCRIPTION
Modified  /trunk/madman/Rpacks/PathNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/PhenStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/Polyfit/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProCoNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/Prostar/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProtGenerics/DESCRIPTION
Modified  /trunk/madman/Rpacks/ProteomicsAnnotationHubData/DESCRIPTION
Modified  /trunk/madman/Rpacks/PureCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/Pviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/QDNAseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUALIFIER/DESCRIPTION
Modified  /trunk/madman/Rpacks/QUBIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuartPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuasR/DESCRIPTION
Modified  /trunk/madman/Rpacks/QuaternaryProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/R3CPET/DESCRIPTION
Modified  /trunk/madman/Rpacks/R453Plus1Toolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/R4RNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBGL/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RBioinf/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCASPAR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCy3/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCyjs/DESCRIPTION
Modified  /trunk/madman/Rpacks/RCytoscape/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDAVIDWebService/DESCRIPTION
Modified  /trunk/madman/Rpacks/RDRToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/REDseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGalaxy/DESCRIPTION
Modified  /trunk/madman/Rpacks/RGraph2js/DESCRIPTION
Modified  /trunk/madman/Rpacks/RIPSeeker/DESCRIPTION
Modified  /trunk/madman/Rpacks/RImmPort/DESCRIPTION
Modified  /trunk/madman/Rpacks/RLMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/RMassBank/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNASeqPower/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAinteract/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAither/DESCRIPTION
Modified  /trunk/madman/Rpacks/RNAprobR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROC/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/ROntoTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/RPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RRHO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RSVSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGA/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTCGAToolbox/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTN/DESCRIPTION
Modified  /trunk/madman/Rpacks/RTopper/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVcorr/DESCRIPTION
Modified  /trunk/madman/Rpacks/RUVnormalize/DESCRIPTION
Modified  /trunk/madman/Rpacks/RWebServices/DESCRIPTION
Modified  /trunk/madman/Rpacks/RamiGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/RankProd/DESCRIPTION
Modified  /trunk/madman/Rpacks/RareVariantVis/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/RbcBook1/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rbowtie/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcade/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rchemcpp/DESCRIPTION
Modified  /trunk/madman/Rpacks/RchyOptimyx/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rcpi/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rdisop/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReQON/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReactomePA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReadqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RedeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/RefPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/Repitools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ReportingTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rgraphviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rhtslib/DESCRIPTION
Modified  /trunk/madman/Rpacks/RiboProfiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/Ringo/DESCRIPTION
Modified  /trunk/madman/Rpacks/Risa/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rmagpie/DESCRIPTION
Modified  /trunk/madman/Rpacks/RmiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/RnaSeqSampleSize/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rnits/DESCRIPTION
Modified  /trunk/madman/Rpacks/Roleswitch/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rolexa/DESCRIPTION
Modified  /trunk/madman/Rpacks/RpsiXML/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsamtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rsubread/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rtreemix/DESCRIPTION
Modified  /trunk/madman/Rpacks/S4Vectors/DESCRIPTION
Modified  /trunk/madman/Rpacks/SAGx/DESCRIPTION
Modified  /trunk/madman/Rpacks/SANTA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SBMLR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SC3/DESCRIPTION
Modified  /trunk/madman/Rpacks/SCAN.UPC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SELEX/DESCRIPTION
Modified  /trunk/madman/Rpacks/SEPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SGSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/SICtools/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SIMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/SISPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SJava/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLGI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SLqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/SMITE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNAGEE/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPRelate/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPchip/DESCRIPTION
Modified  /trunk/madman/Rpacks/SNPhood/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SPIA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SQUADD/DESCRIPTION
Modified  /trunk/madman/Rpacks/SRAdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SSPA/DESCRIPTION
Modified  /trunk/madman/Rpacks/STAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/STATegRa/DESCRIPTION
Modified  /trunk/madman/Rpacks/STRINGdb/DESCRIPTION
Modified  /trunk/madman/Rpacks/SVM2CRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/SWATH2stats/DESCRIPTION
Modified  /trunk/madman/Rpacks/SamSPECTRAL/DESCRIPTION
Modified  /trunk/madman/Rpacks/ScISI/DESCRIPTION
Modified  /trunk/madman/Rpacks/SemDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SeqVarTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/ShortRead/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/SigFuge/DESCRIPTION
Modified  /trunk/madman/Rpacks/SimBindProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/SomatiCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/SomaticSignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpacePAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpeCond/DESCRIPTION
Modified  /trunk/madman/Rpacks/SpidermiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/SplicingGraphs/DESCRIPTION
Modified  /trunk/madman/Rpacks/Starr/DESCRIPTION
Modified  /trunk/madman/Rpacks/Streamer/DESCRIPTION
Modified  /trunk/madman/Rpacks/SummarizedExperiment/DESCRIPTION
Modified  /trunk/madman/Rpacks/Sushi/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwathXtend/DESCRIPTION
Modified  /trunk/madman/Rpacks/SwimR/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCGAbiolinks/DESCRIPTION
Modified  /trunk/madman/Rpacks/TDARACNE/DESCRIPTION
Modified  /trunk/madman/Rpacks/TEQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TFBSTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/TIN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TPP/DESCRIPTION
Modified  /trunk/madman/Rpacks/TRONCO/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSCAN/DESCRIPTION
Modified  /trunk/madman/Rpacks/TSSi/DESCRIPTION
Modified  /trunk/madman/Rpacks/TarSeqQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetScore/DESCRIPTION
Modified  /trunk/madman/Rpacks/TargetSearch/DESCRIPTION
Modified  /trunk/madman/Rpacks/TitanCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ToPASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/TransView/DESCRIPTION
Modified  /trunk/madman/Rpacks/TurboNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/TypeInfo/DESCRIPTION
Modified  /trunk/madman/Rpacks/UNDO/DESCRIPTION
Modified  /trunk/madman/Rpacks/UniProt.ws/DESCRIPTION
Modified  /trunk/madman/Rpacks/Uniquorn/DESCRIPTION
Modified  /trunk/madman/Rpacks/VanillaICE/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantAnnotation/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantFiltering/DESCRIPTION
Modified  /trunk/madman/Rpacks/VariantTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/Vega/DESCRIPTION
Modified  /trunk/madman/Rpacks/VegaMC/DESCRIPTION
Modified  /trunk/madman/Rpacks/XBSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/XDE/DESCRIPTION
Modified  /trunk/madman/Rpacks/XVector/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Base/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Classif/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Core/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Preproc/DESCRIPTION
Modified  /trunk/madman/Rpacks/a4Reporting/DESCRIPTION
Modified  /trunk/madman/Rpacks/aCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/acde/DESCRIPTION
Modified  /trunk/madman/Rpacks/adSplit/DESCRIPTION
Modified  /trunk/madman/Rpacks/affxparser/DESCRIPTION
Modified  /trunk/madman/Rpacks/affy/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyContam/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyILM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPLM/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyPara/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyQCReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/affycoretools/DESCRIPTION
Modified  /trunk/madman/Rpacks/affyio/DESCRIPTION
Modified  /trunk/madman/Rpacks/affylmGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/affypdnn/DESCRIPTION
Modified  /trunk/madman/Rpacks/agilp/DESCRIPTION
Modified  /trunk/madman/Rpacks/alsace/DESCRIPTION
Modified  /trunk/madman/Rpacks/altcdfenvs/DESCRIPTION
Modified  /trunk/madman/Rpacks/ampliQueso/DESCRIPTION
Modified  /trunk/madman/Rpacks/annaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/annmap/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotate/DESCRIPTION
Modified  /trunk/madman/Rpacks/annotationTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/anota/DESCRIPTION
Modified  /trunk/madman/Rpacks/antiProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/apComplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/aroma.light/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayMvout/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQuality/DESCRIPTION
Modified  /trunk/madman/Rpacks/arrayQualityMetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/attract/DESCRIPTION
Modified  /trunk/madman/Rpacks/bacon/DESCRIPTION
Modified  /trunk/madman/Rpacks/ballgown/DESCRIPTION
Modified  /trunk/madman/Rpacks/bamsignals/DESCRIPTION
Modified  /trunk/madman/Rpacks/baySeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarray/DESCRIPTION
Modified  /trunk/madman/Rpacks/beadarraySNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/betr/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgafun/DESCRIPTION
Modified  /trunk/madman/Rpacks/bgx/DESCRIPTION
Modified  /trunk/madman/Rpacks/bigmemoryExtras/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/bioassayR/DESCRIPTION
Modified  /trunk/madman/Rpacks/biobroom/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocGraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/biocViews/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomaRt/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomformat/DESCRIPTION
Modified  /trunk/madman/Rpacks/biomvRCNS/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosigner/DESCRIPTION
Modified  /trunk/madman/Rpacks/biosvd/DESCRIPTION
Modified  /trunk/madman/Rpacks/biovizBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/birta/DESCRIPTION
Modified  /trunk/madman/Rpacks/birte/DESCRIPTION
Modified  /trunk/madman/Rpacks/blima/DESCRIPTION
Modified  /trunk/madman/Rpacks/bridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/bsseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/bumphunter/DESCRIPTION
Modified  /trunk/madman/Rpacks/caOmicsV/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/cancerclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/casper/DESCRIPTION
Modified  /trunk/madman/Rpacks/categoryCompare/DESCRIPTION
Modified  /trunk/madman/Rpacks/ccrepe/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellGrowth/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellHTS2/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellTree/DESCRIPTION
Modified  /trunk/madman/Rpacks/cellity/DESCRIPTION
Modified  /trunk/madman/Rpacks/cghMCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/charm/DESCRIPTION
Modified  /trunk/madman/Rpacks/chimera/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipenrich/DESCRIPTION
Modified  /trunk/madman/Rpacks/chipseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/chopsticks/DESCRIPTION
Modified  /trunk/madman/Rpacks/chroGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromDraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/chromPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/cisPath/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleanUpdTSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cleaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/clippda/DESCRIPTION
Modified  /trunk/madman/Rpacks/clipper/DESCRIPTION
Modified  /trunk/madman/Rpacks/clonotypeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/clst/DESCRIPTION
Modified  /trunk/madman/Rpacks/clstutils/DESCRIPTION
Modified  /trunk/madman/Rpacks/clustComp/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterProfiler/DESCRIPTION
Modified  /trunk/madman/Rpacks/clusterStab/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/cn.mops/DESCRIPTION
Modified  /trunk/madman/Rpacks/cnvGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/coGPS/DESCRIPTION
Modified  /trunk/madman/Rpacks/coMET/DESCRIPTION
Modified  /trunk/madman/Rpacks/coRNAi/DESCRIPTION
Modified  /trunk/madman/Rpacks/cobindR/DESCRIPTION
Modified  /trunk/madman/Rpacks/codelink/DESCRIPTION
Modified  /trunk/madman/Rpacks/cogena/DESCRIPTION
Modified  /trunk/madman/Rpacks/compEpiTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/compcodeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/consensusSeekeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/contiBAIT/DESCRIPTION
Modified  /trunk/madman/Rpacks/conumee/DESCRIPTION
Modified  /trunk/madman/Rpacks/convert/DESCRIPTION
Modified  /trunk/madman/Rpacks/copa/DESCRIPTION
Modified  /trunk/madman/Rpacks/copynumber/DESCRIPTION
Modified  /trunk/madman/Rpacks/cosmiq/DESCRIPTION
Modified  /trunk/madman/Rpacks/cpvSNP/DESCRIPTION
Modified  /trunk/madman/Rpacks/cqn/DESCRIPTION
Modified  /trunk/madman/Rpacks/crlmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/csaw/DESCRIPTION
Modified  /trunk/madman/Rpacks/ctc/DESCRIPTION
Modified  /trunk/madman/Rpacks/cummeRbund/DESCRIPTION
Modified  /trunk/madman/Rpacks/customProDB/DESCRIPTION
Modified  /trunk/madman/Rpacks/cycle/DESCRIPTION
Modified  /trunk/madman/Rpacks/cytofkit/DESCRIPTION
Modified  /trunk/madman/Rpacks/daMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/dada2/DESCRIPTION
Modified  /trunk/madman/Rpacks/dagLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/dcGSA/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddCt/DESCRIPTION
Modified  /trunk/madman/Rpacks/ddgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/debrowser/DESCRIPTION
Modified  /trunk/madman/Rpacks/deepSNV/DESCRIPTION
Modified  /trunk/madman/Rpacks/deltaGseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderHelper/DESCRIPTION
Modified  /trunk/madman/Rpacks/derfinderPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/destiny/DESCRIPTION
Modified  /trunk/madman/Rpacks/dexus/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffGeneAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffHic/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diggit/DESCRIPTION
Modified  /trunk/madman/Rpacks/dks/DESCRIPTION
Modified  /trunk/madman/Rpacks/domainsignatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/doppelgangR/DESCRIPTION
Modified  /trunk/madman/Rpacks/dualKS/DESCRIPTION
Modified  /trunk/madman/Rpacks/dupRadar/DESCRIPTION
Modified  /trunk/madman/Rpacks/dyebias/DESCRIPTION
Modified  /trunk/madman/Rpacks/easyRNASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ecolitk/DESCRIPTION
Modified  /trunk/madman/Rpacks/edge/DESCRIPTION
Modified  /trunk/madman/Rpacks/edgeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/eisa/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensemblVEP/DESCRIPTION
Modified  /trunk/madman/Rpacks/ensembldb/DESCRIPTION
Modified  /trunk/madman/Rpacks/epigenomix/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizr/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrData/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrServer/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
Modified  /trunk/madman/Rpacks/erccdashboard/DESCRIPTION
Modified  /trunk/madman/Rpacks/erma/DESCRIPTION
Modified  /trunk/madman/Rpacks/eudysbiome/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomeCopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/exomePeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/explorase/DESCRIPTION
Modified  /trunk/madman/Rpacks/fCI/DESCRIPTION
Modified  /trunk/madman/Rpacks/fabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/facopy/DESCRIPTION
Modified  /trunk/madman/Rpacks/factDesign/DESCRIPTION
Modified  /trunk/madman/Rpacks/farms/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastLiquidAssociation/DESCRIPTION
Modified  /trunk/madman/Rpacks/fastseg/DESCRIPTION
Modified  /trunk/madman/Rpacks/fdrame/DESCRIPTION
Modified  /trunk/madman/Rpacks/ffpe/DESCRIPTION
Modified  /trunk/madman/Rpacks/flagme/DESCRIPTION
Modified  /trunk/madman/Rpacks/flipflop/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowAI/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBeads/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowBin/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCHIC/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCL/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowCyBar/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowDensity/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFP/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowFit/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMatch/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMeans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowMerge/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPeaks/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowPlots/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowQB/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowTrans/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowType/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowUtils/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowVS/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowViz/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowWorkspace/DESCRIPTION
Modified  /trunk/madman/Rpacks/flowcatchR/DESCRIPTION
Modified  /trunk/madman/Rpacks/fmcsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/focalCall/DESCRIPTION
Modified  /trunk/madman/Rpacks/frma/DESCRIPTION
Modified  /trunk/madman/Rpacks/frmaTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/gCMAPWeb/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/gQTLstats/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaga/DESCRIPTION
Modified  /trunk/madman/Rpacks/gage/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaggle/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaia/DESCRIPTION
Modified  /trunk/madman/Rpacks/garfield/DESCRIPTION
Modified  /trunk/madman/Rpacks/gaucho/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcatest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gcrma/DESCRIPTION
Modified  /trunk/madman/Rpacks/gdsfmt/DESCRIPTION
Modified  /trunk/madman/Rpacks/geNetClassifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/geecc/DESCRIPTION
Modified  /trunk/madman/Rpacks/genArise/DESCRIPTION
Modified  /trunk/madman/Rpacks/genbankr/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRecommender/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneRxCluster/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefilter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genefu/DESCRIPTION
Modified  /trunk/madman/Rpacks/geneplotter/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoCN/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomation/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomeIntervals/DESCRIPTION
Modified  /trunk/madman/Rpacks/genomes/DESCRIPTION
Modified  /trunk/madman/Rpacks/genoset/DESCRIPTION
Modified  /trunk/madman/Rpacks/genotypeeval/DESCRIPTION
Modified  /trunk/madman/Rpacks/genphen/DESCRIPTION
Modified  /trunk/madman/Rpacks/gespeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggbio/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggcyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/ggtree/DESCRIPTION
Modified  /trunk/madman/Rpacks/girafe/DESCRIPTION
Modified  /trunk/madman/Rpacks/globalSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/globaltest/DESCRIPTION
Modified  /trunk/madman/Rpacks/gmapR/DESCRIPTION
Modified  /trunk/madman/Rpacks/goProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/goTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/goseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/gpls/DESCRIPTION
Modified  /trunk/madman/Rpacks/gprege/DESCRIPTION
Modified  /trunk/madman/Rpacks/graph/DESCRIPTION
Modified  /trunk/madman/Rpacks/graphite/DESCRIPTION
Modified  /trunk/madman/Rpacks/groHMM/DESCRIPTION
Modified  /trunk/madman/Rpacks/gtrellis/DESCRIPTION
Modified  /trunk/madman/Rpacks/gwascat/DESCRIPTION
Modified  /trunk/madman/Rpacks/h5vc/DESCRIPTION
Modified  /trunk/madman/Rpacks/hapFabia/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiAnnotator/DESCRIPTION
Modified  /trunk/madman/Rpacks/hiReadsProcessor/DESCRIPTION
Modified  /trunk/madman/Rpacks/hierGWAS/DESCRIPTION
Modified  /trunk/madman/Rpacks/hopach/DESCRIPTION
Modified  /trunk/madman/Rpacks/hpar/DESCRIPTION
Modified  /trunk/madman/Rpacks/htSeqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/hyperdraw/DESCRIPTION
Modified  /trunk/madman/Rpacks/hypergraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/iASeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBBiG/DESCRIPTION
Modified  /trunk/madman/Rpacks/iBMQ/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCARE/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCOBRA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iCheck/DESCRIPTION
Modified  /trunk/madman/Rpacks/iChip/DESCRIPTION
Modified  /trunk/madman/Rpacks/iClusterPlus/DESCRIPTION
Modified  /trunk/madman/Rpacks/iGC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iPAC/DESCRIPTION
Modified  /trunk/madman/Rpacks/iSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/ibh/DESCRIPTION
Modified  /trunk/madman/Rpacks/idiogram/DESCRIPTION
Modified  /trunk/madman/Rpacks/illuminaio/DESCRIPTION
Modified  /trunk/madman/Rpacks/imageHTS/DESCRIPTION
Modified  /trunk/madman/Rpacks/immunoClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/impute/DESCRIPTION
Modified  /trunk/madman/Rpacks/inSilicoDb/DESCRIPTION
Modified  /trunk/madman/Rpacks/inSilicoMerging/DESCRIPTION
Modified  /trunk/madman/Rpacks/intansv/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplay/DESCRIPTION
Modified  /trunk/madman/Rpacks/interactiveDisplayBase/DESCRIPTION
Modified  /trunk/madman/Rpacks/inveRsion/DESCRIPTION
Modified  /trunk/madman/Rpacks/iontree/DESCRIPTION
Modified  /trunk/madman/Rpacks/isobar/DESCRIPTION
Modified  /trunk/madman/Rpacks/isomiRs/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/iterativeBMAsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/jmosaics/DESCRIPTION
Modified  /trunk/madman/Rpacks/joda/DESCRIPTION
Modified  /trunk/madman/Rpacks/kebabs/DESCRIPTION
Modified  /trunk/madman/Rpacks/keggorthology/DESCRIPTION
Modified  /trunk/madman/Rpacks/kimod/DESCRIPTION
Modified  /trunk/madman/Rpacks/lapmix/DESCRIPTION
Modified  /trunk/madman/Rpacks/ldblock/DESCRIPTION
Modified  /trunk/madman/Rpacks/les/DESCRIPTION
Modified  /trunk/madman/Rpacks/lfa/DESCRIPTION
Modified  /trunk/madman/Rpacks/limma/DESCRIPTION
Modified  /trunk/madman/Rpacks/limmaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/lmdme/DESCRIPTION
Modified  /trunk/madman/Rpacks/logicFS/DESCRIPTION
Modified  /trunk/madman/Rpacks/logitT/DESCRIPTION
Modified  /trunk/madman/Rpacks/lol/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpNet/DESCRIPTION
Modified  /trunk/madman/Rpacks/lpsymphony/DESCRIPTION
Modified  /trunk/madman/Rpacks/lumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mAPKL/DESCRIPTION
Modified  /trunk/madman/Rpacks/mBPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/mQTL.NMR/DESCRIPTION
Modified  /trunk/madman/Rpacks/maCorrPlot/DESCRIPTION
Modified  /trunk/madman/Rpacks/maPredictDSC/DESCRIPTION
Modified  /trunk/madman/Rpacks/maSigPro/DESCRIPTION
Modified  /trunk/madman/Rpacks/maanova/DESCRIPTION
Modified  /trunk/madman/Rpacks/macat/DESCRIPTION
Modified  /trunk/madman/Rpacks/made4/DESCRIPTION
Modified  /trunk/madman/Rpacks/maigesPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/makecdfenv/DESCRIPTION
Modified  /trunk/madman/Rpacks/manta/DESCRIPTION
Modified  /trunk/madman/Rpacks/marray/DESCRIPTION
Modified  /trunk/madman/Rpacks/maskBAD/DESCRIPTION
Modified  /trunk/madman/Rpacks/massiR/DESCRIPTION
Modified  /trunk/madman/Rpacks/matchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/mcaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/mdqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/meshr/DESCRIPTION
Modified  /trunk/madman/Rpacks/messina/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaCCA/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaMS/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaX/DESCRIPTION
Modified  /trunk/madman/Rpacks/metabomxtr/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagene/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeFeatures/DESCRIPTION
Modified  /trunk/madman/Rpacks/metagenomeSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/metahdep/DESCRIPTION
Modified  /trunk/madman/Rpacks/metaseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/methVisual/DESCRIPTION
Modified  /trunk/madman/Rpacks/methyAnalysis/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylMnM/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylPipe/DESCRIPTION
Modified  /trunk/madman/Rpacks/methylumi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mgsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRLAB/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAmeConverter/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNApath/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRNAtap/DESCRIPTION
Modified  /trunk/madman/Rpacks/miRcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/microRNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/minet/DESCRIPTION
Modified  /trunk/madman/Rpacks/minfi/DESCRIPTION
Modified  /trunk/madman/Rpacks/mirIntegrator/DESCRIPTION
Modified  /trunk/madman/Rpacks/missMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/mitoODE/DESCRIPTION
Modified  /trunk/madman/Rpacks/mmnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/mogsa/DESCRIPTION
Modified  /trunk/madman/Rpacks/monocle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mosaics/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifRG/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifStack/DESCRIPTION
Modified  /trunk/madman/Rpacks/motifbreakR/DESCRIPTION
Modified  /trunk/madman/Rpacks/msa/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsEDA/DESCRIPTION
Modified  /trunk/madman/Rpacks/msmsTests/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiClust/DESCRIPTION
Modified  /trunk/madman/Rpacks/multiscan/DESCRIPTION
Modified  /trunk/madman/Rpacks/multtest/DESCRIPTION
Modified  /trunk/madman/Rpacks/muscle/DESCRIPTION
Modified  /trunk/madman/Rpacks/mvGST/DESCRIPTION
Modified  /trunk/madman/Rpacks/mygene/DESCRIPTION
Modified  /trunk/madman/Rpacks/myvariant/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzID/DESCRIPTION
Modified  /trunk/madman/Rpacks/mzR/DESCRIPTION
Modified  /trunk/madman/Rpacks/ncdfFlow/DESCRIPTION
Modified  /trunk/madman/Rpacks/neaGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/nem/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbenchmark/DESCRIPTION
Modified  /trunk/madman/Rpacks/netbiov/DESCRIPTION
Modified  /trunk/madman/Rpacks/nethet/DESCRIPTION
Modified  /trunk/madman/Rpacks/netresponse/DESCRIPTION
Modified  /trunk/madman/Rpacks/networkBMA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nnNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/nondetects/DESCRIPTION
Modified  /trunk/madman/Rpacks/normalize450K/DESCRIPTION
Modified  /trunk/madman/Rpacks/npGSEA/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleR/DESCRIPTION
Modified  /trunk/madman/Rpacks/nucleoSim/DESCRIPTION
Modified  /trunk/madman/Rpacks/nudge/DESCRIPTION
Modified  /trunk/madman/Rpacks/occugene/DESCRIPTION
Modified  /trunk/madman/Rpacks/odseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligo/DESCRIPTION
Modified  /trunk/madman/Rpacks/oligoClasses/DESCRIPTION
Modified  /trunk/madman/Rpacks/omicade4/DESCRIPTION
Modified  /trunk/madman/Rpacks/oneChannelGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/ontoCAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/openCyto/DESCRIPTION
Modified  /trunk/madman/Rpacks/oposSOM/DESCRIPTION
Modified  /trunk/madman/Rpacks/oppar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRoloc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pRolocGUI/DESCRIPTION
Modified  /trunk/madman/Rpacks/paircompviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/pandaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/panp/DESCRIPTION
Modified  /trunk/madman/Rpacks/parglms/DESCRIPTION
Modified  /trunk/madman/Rpacks/parody/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathRender/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathVar/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathifier/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathview/DESCRIPTION
Modified  /trunk/madman/Rpacks/paxtoolsr/DESCRIPTION
Modified  /trunk/madman/Rpacks/pbcmc/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaExplorer/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaGoPromoter/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcaMethods/DESCRIPTION
Modified  /trunk/madman/Rpacks/pcot2/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdInfoBuilder/DESCRIPTION
Modified  /trunk/madman/Rpacks/pdmclass/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepStat/DESCRIPTION
Modified  /trunk/madman/Rpacks/pepXMLTab/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/phenoTest/DESCRIPTION
Modified  /trunk/madman/Rpacks/phyloseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/piano/DESCRIPTION
Modified  /trunk/madman/Rpacks/pickgene/DESCRIPTION
Modified  /trunk/madman/Rpacks/pint/DESCRIPTION
Modified  /trunk/madman/Rpacks/pkgDepTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/plateCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/plethy/DESCRIPTION
Modified  /trunk/madman/Rpacks/plgem/DESCRIPTION
Modified  /trunk/madman/Rpacks/plier/DESCRIPTION
Modified  /trunk/madman/Rpacks/plrs/DESCRIPTION
Modified  /trunk/madman/Rpacks/plw/DESCRIPTION
Modified  /trunk/madman/Rpacks/pmm/DESCRIPTION
Modified  /trunk/madman/Rpacks/podkat/DESCRIPTION
Modified  /trunk/madman/Rpacks/polyester/DESCRIPTION
Modified  /trunk/madman/Rpacks/ppiStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/pqsfinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/prada/DESCRIPTION
Modified  /trunk/madman/Rpacks/prebs/DESCRIPTION
Modified  /trunk/madman/Rpacks/predictionet/DESCRIPTION
Modified  /trunk/madman/Rpacks/preprocessCore/DESCRIPTION
Modified  /trunk/madman/Rpacks/proBAMr/DESCRIPTION
Modified  /trunk/madman/Rpacks/procoil/DESCRIPTION
Modified  /trunk/madman/Rpacks/profileScoreDist/DESCRIPTION
Modified  /trunk/madman/Rpacks/prot2D/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteinProfiles/DESCRIPTION
Modified  /trunk/madman/Rpacks/proteoQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/psygenet2r/DESCRIPTION
Modified  /trunk/madman/Rpacks/puma/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvac/DESCRIPTION
Modified  /trunk/madman/Rpacks/pvca/DESCRIPTION
Modified  /trunk/madman/Rpacks/pwOmics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qcmetrics/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpcrNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/qpgraph/DESCRIPTION
Modified  /trunk/madman/Rpacks/qrqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantro/DESCRIPTION
Modified  /trunk/madman/Rpacks/quantsmooth/DESCRIPTION
Modified  /trunk/madman/Rpacks/qusage/DESCRIPTION
Modified  /trunk/madman/Rpacks/qvalue/DESCRIPTION
Modified  /trunk/madman/Rpacks/r3Cseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/rBiopaxParser/DESCRIPTION
Modified  /trunk/madman/Rpacks/rCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGADEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rGREAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rHVDM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rMAT/DESCRIPTION
Modified  /trunk/madman/Rpacks/rRDP/DESCRIPTION
Modified  /trunk/madman/Rpacks/rSFFreader/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRM/DESCRIPTION
Modified  /trunk/madman/Rpacks/rTRMui/DESCRIPTION
Modified  /trunk/madman/Rpacks/rain/DESCRIPTION
Modified  /trunk/madman/Rpacks/rama/DESCRIPTION
Modified  /trunk/madman/Rpacks/randPack/DESCRIPTION
Modified  /trunk/madman/Rpacks/rbsurv/DESCRIPTION
Modified  /trunk/madman/Rpacks/rcellminer/DESCRIPTION
Modified  /trunk/madman/Rpacks/reb/DESCRIPTION
Modified  /trunk/madman/Rpacks/recoup/DESCRIPTION
Modified  /trunk/madman/Rpacks/regionReport/DESCRIPTION
Modified  /trunk/madman/Rpacks/regioneR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rfPred/DESCRIPTION
Modified  /trunk/madman/Rpacks/rgsepd/DESCRIPTION
Modified  /trunk/madman/Rpacks/rhdf5/DESCRIPTION
Modified  /trunk/madman/Rpacks/riboSeqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaSeqMap/DESCRIPTION
Modified  /trunk/madman/Rpacks/rnaseqcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/roar/DESCRIPTION
Modified  /trunk/madman/Rpacks/rols/DESCRIPTION
Modified  /trunk/madman/Rpacks/ropls/DESCRIPTION
Modified  /trunk/madman/Rpacks/rpx/DESCRIPTION
Modified  /trunk/madman/Rpacks/rqubic/DESCRIPTION
Modified  /trunk/madman/Rpacks/rsbml/DESCRIPTION
Modified  /trunk/madman/Rpacks/rtracklayer/DESCRIPTION
Modified  /trunk/madman/Rpacks/sRAP/DESCRIPTION
Modified  /trunk/madman/Rpacks/sSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/safe/DESCRIPTION
Modified  /trunk/madman/Rpacks/sagenhaft/DESCRIPTION
Modified  /trunk/madman/Rpacks/sangerseqR/DESCRIPTION
Modified  /trunk/madman/Rpacks/sapFinder/DESCRIPTION
Modified  /trunk/madman/Rpacks/saps/DESCRIPTION
Modified  /trunk/madman/Rpacks/savR/DESCRIPTION
Modified  /trunk/madman/Rpacks/scater/DESCRIPTION
Modified  /trunk/madman/Rpacks/scde/DESCRIPTION
Modified  /trunk/madman/Rpacks/scran/DESCRIPTION
Modified  /trunk/madman/Rpacks/scsR/DESCRIPTION
Modified  /trunk/madman/Rpacks/segmentSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/seq2pathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqCNA/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqPattern/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqbias/DESCRIPTION
Modified  /trunk/madman/Rpacks/seqplots/DESCRIPTION
Modified  /trunk/madman/Rpacks/sevenbridges/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyMethyl/DESCRIPTION
Modified  /trunk/madman/Rpacks/shinyTANDEM/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigPathway/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/siggenes/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigsquared/DESCRIPTION
Modified  /trunk/madman/Rpacks/similaRpeak/DESCRIPTION
Modified  /trunk/madman/Rpacks/simpleaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/simulatorZ/DESCRIPTION
Modified  /trunk/madman/Rpacks/sincell/DESCRIPTION
Modified  /trunk/madman/Rpacks/sizepower/DESCRIPTION
Modified  /trunk/madman/Rpacks/skewr/DESCRIPTION
Modified  /trunk/madman/Rpacks/snapCGH/DESCRIPTION
Modified  /trunk/madman/Rpacks/snm/DESCRIPTION
Modified  /trunk/madman/Rpacks/snpStats/DESCRIPTION
Modified  /trunk/madman/Rpacks/soGGi/DESCRIPTION
Modified  /trunk/madman/Rpacks/spade/DESCRIPTION
Modified  /trunk/madman/Rpacks/specL/DESCRIPTION
Modified  /trunk/madman/Rpacks/spikeLI/DESCRIPTION
Modified  /trunk/madman/Rpacks/spkTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/spliceSites/DESCRIPTION
Modified  /trunk/madman/Rpacks/splicegear/DESCRIPTION
Modified  /trunk/madman/Rpacks/splineTimeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/splots/DESCRIPTION
Modified  /trunk/madman/Rpacks/spotSegmentation/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscore/DESCRIPTION
Modified  /trunk/madman/Rpacks/sscu/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssize/DESCRIPTION
Modified  /trunk/madman/Rpacks/ssviz/DESCRIPTION
Modified  /trunk/madman/Rpacks/staRank/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepNorm/DESCRIPTION
Modified  /trunk/madman/Rpacks/stepwiseCM/DESCRIPTION
Modified  /trunk/madman/Rpacks/subSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/supraHex/DESCRIPTION
Modified  /trunk/madman/Rpacks/survcomp/DESCRIPTION
Modified  /trunk/madman/Rpacks/sva/DESCRIPTION
Modified  /trunk/madman/Rpacks/switchBox/DESCRIPTION
Modified  /trunk/madman/Rpacks/synapter/DESCRIPTION
Modified  /trunk/madman/Rpacks/synlet/DESCRIPTION
Modified  /trunk/madman/Rpacks/systemPipeR/DESCRIPTION
Modified  /trunk/madman/Rpacks/tRanslatome/DESCRIPTION
Modified  /trunk/madman/Rpacks/ternarynet/DESCRIPTION
Modified  /trunk/madman/Rpacks/tigre/DESCRIPTION
Modified  /trunk/madman/Rpacks/tilingArray/DESCRIPTION
Modified  /trunk/madman/Rpacks/timecourse/DESCRIPTION
Modified  /trunk/madman/Rpacks/tkWidgets/DESCRIPTION
Modified  /trunk/madman/Rpacks/tofsims/DESCRIPTION
Modified  /trunk/madman/Rpacks/topGO/DESCRIPTION
Modified  /trunk/madman/Rpacks/trackViewer/DESCRIPTION
Modified  /trunk/madman/Rpacks/tracktables/DESCRIPTION
Modified  /trunk/madman/Rpacks/transcriptR/DESCRIPTION
Modified  /trunk/madman/Rpacks/traseR/DESCRIPTION
Modified  /trunk/madman/Rpacks/triform/DESCRIPTION
Modified  /trunk/madman/Rpacks/trigger/DESCRIPTION
Modified  /trunk/madman/Rpacks/trio/DESCRIPTION
Modified  /trunk/madman/Rpacks/triplex/DESCRIPTION
Modified  /trunk/madman/Rpacks/tspair/DESCRIPTION
Modified  /trunk/madman/Rpacks/tweeDEseq/DESCRIPTION
Modified  /trunk/madman/Rpacks/twilight/DESCRIPTION
Modified  /trunk/madman/Rpacks/tximport/DESCRIPTION
Modified  /trunk/madman/Rpacks/unifiedWMWqPCR/DESCRIPTION
Modified  /trunk/madman/Rpacks/variancePartition/DESCRIPTION
Modified  /trunk/madman/Rpacks/vbmp/DESCRIPTION
Modified  /trunk/madman/Rpacks/viper/DESCRIPTION
Modified  /trunk/madman/Rpacks/vsn/DESCRIPTION
Modified  /trunk/madman/Rpacks/vtpnet/DESCRIPTION
Modified  /trunk/madman/Rpacks/wateRmelon/DESCRIPTION
Modified  /trunk/madman/Rpacks/wavClusteR/DESCRIPTION
Modified  /trunk/madman/Rpacks/waveTiling/DESCRIPTION
Modified  /trunk/madman/Rpacks/weaver/DESCRIPTION
Modified  /trunk/madman/Rpacks/webbioc/DESCRIPTION
Modified  /trunk/madman/Rpacks/widgetTools/DESCRIPTION
Modified  /trunk/madman/Rpacks/xcms/DESCRIPTION
Modified  /trunk/madman/Rpacks/xmapbridge/DESCRIPTION
Modified  /trunk/madman/Rpacks/xps/DESCRIPTION
Modified  /trunk/madman/Rpacks/yaqcaffy/DESCRIPTION
Modified  /trunk/madman/Rpacks/zlibbioc/DESCRIPTION
Bump versions prior to creation of 3.3 branch
Revision: 117077
Author: t.silva
Date: 2016-05-03T20:58:45+00:00
Paths:
Modified  /trunk/madman/Rpacks/TCGAbiolinks/NAMESPACE
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGADownload.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAInternal.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAupdate.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/TCGAvisualize.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/R/methylation.R
Modified  /trunk/madman/Rpacks/TCGAbiolinks/man/TCGAvisualize_Heatmap.Rd
Merge branch 'master' into devel

* master: (863 commits)
  Small fixes
  Improving verifications in DMR
  Fixing heatmap
  Improving getFileNames
  Fixing biomart dependency
  db update
  Adding some verification steps in the DMR function
  Fixing doc
  Adding possibility to change colors of % in profile plot
  Bug fix
  Improving EA barplot
  Improving graphs/vignette
  Fixing adding names
  ordering by thrshold is this solving the color problem?
  BUG FIX
  Verifying arguments
  Highlighting a genes/probes in volcano plot
  fixing doc
  Fixing typo error
  Improving case 4 code.
  ...

From: tiagochst <tiagochst@gmail.com>
Revision: 117076
Author: d.tenenbaum
Date: 2016-05-03T20:57:26+00:00
Paths:
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
make version # appropriate for devel
Revision: 117075
Author: r.castelo
Date: 2016-05-03T20:55:42+00:00
Paths:
Modified  /trunk/madman/Rpacks/VariantFiltering/DESCRIPTION
version bump.
Revision: 117074
Author: w.luo
Date: 2016-05-03T20:38:52+00:00
Paths:
Modified  /trunk/madman/Rpacks/pathview/DESCRIPTION
Modified  /trunk/madman/Rpacks/pathview/R/zzz.R
new version 1.11.4
Revision: 117072
Author: r.otto
Date: 2016-05-03T18:35:24+00:00
Paths:
Modified  /trunk/madman/Rpacks/Uniquorn/DESCRIPTION
Modified  /trunk/madman/Rpacks/Uniquorn/inst/NEWS.Rd
Minor stats changes
Revision: 117069
Author: w.souza
Date: 2016-05-03T16:48:21+00:00
Paths:
Modified  /trunk/madman/Rpacks/Rqc/DESCRIPTION
Modified  /trunk/madman/Rpacks/Rqc/NAMESPACE
Modified  /trunk/madman/Rpacks/Rqc/R/Rqc-package.R
Modified  /trunk/madman/Rpacks/Rqc/R/rqcQA-methods.R
Modified  /trunk/madman/Rpacks/Rqc/R/utils.R
Modified  /trunk/madman/Rpacks/Rqc/inst/extdata/Rqc.rda
Added total reads of FASTQ file

From: Welliton Souza <well309@gmail.com>
Revision: 117068
Author: h.corradabravo
Date: 2016-05-03T14:37:49+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
update version dependencies

From: Hector Corrada Bravo <hcorrada@gmail.com>
Revision: 117067
Author: h.corradabravo
Date: 2016-05-03T14:37:44+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrStandalone/vignettes/EpivizrStandalone.Rmd
update version dependencies

From: Hector Corrada Bravo <hcorrada@gmail.com>
Revision: 117066
Author: a.oles
Date: 2016-05-03T14:36:48+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocStyle/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocStyle/inst/resources/tex/Bioconductor2.sty
Modified  /trunk/madman/Rpacks/BiocStyle/vignettes/LatexStyle2.Rnw
BiocStyle2
- improvements to vignette
- tweaked formatting of \packageVersion

From: aoles <andrzej.oles@gmail.com>
Revision: 117065
Author: w.wieringen
Date: 2016-05-03T14:27:17+00:00
Paths:
Modified  /trunk/madman/Rpacks/sigaR/R/plotFunctions.r
Commit changes: first attempt to dix windows build error
Revision: 117064
Author: w.wieringen
Date: 2016-05-03T14:10:25+00:00
Paths:
Modified  /trunk/madman/Rpacks/sigaR/DESCRIPTION
Modified  /trunk/madman/Rpacks/sigaR/NAMESPACE
Modified  /trunk/madman/Rpacks/sigaR/R/classDefinitions.r
Modified  /trunk/madman/Rpacks/sigaR/R/dataManagementFunctions.r
Modified  /trunk/madman/Rpacks/sigaR/R/pathwayFunctions.R
Modified  /trunk/madman/Rpacks/sigaR/R/plotFunctions.r
Modified  /trunk/madman/Rpacks/sigaR/R/privateCisEffectFunctions.R
Modified  /trunk/madman/Rpacks/sigaR/R/rcmFunctions.r
Modified  /trunk/madman/Rpacks/sigaR/inst/CITATION
Modified  /trunk/madman/Rpacks/sigaR/man/ExpressionSet2weightedSubset.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/RCMestimation.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/RCMtest.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/cghCall2maximumSubset.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/cghCall2weightedSubset.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/cghSeg2weightedSubset.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/cisEffectTest.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/cisEffectTune.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/entropyTest.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/expandMatching2singleIDs.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/matchAnn2Ann.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/matchCGHcall2ExpressionSet.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/merge2ExpressionSets.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/merge2cghCalls.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/mutInfTest.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/nBreakpoints.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/pathway1sample.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/pathway2sample.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/pathwayPlot.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/splitMatchingAtBreakpoints.Rd
Modified  /trunk/madman/Rpacks/sigaR/man/uniqGenomicInfo.Rd
Commit changes: fixing notes and warnings
Revision: 117063
Author: g.sales
Date: 2016-05-03T14:07:16+00:00
Paths:
Modified  /trunk/madman/Rpacks/graphite/DESCRIPTION
Modified  /trunk/madman/Rpacks/graphite/R/fetch.R
Modified  /trunk/madman/Rpacks/graphite/data/pathways.RData
Updated pathway data.
Revision: 117062
Author: j.ou
Date: 2016-05-03T13:55:46+00:00
Paths:
Modified  /trunk/madman/Rpacks/dagLogo/DESCRIPTION
Modified  /trunk/madman/Rpacks/dagLogo/NEWS
Modified  /trunk/madman/Rpacks/dagLogo/man/fetchSequence.Rd
Modified  /trunk/madman/Rpacks/dagLogo/man/prepareProteome.Rd
Modified  /trunk/madman/Rpacks/dagLogo/vignettes/dagLogo.Rmd
To catch the error when biomaRt server does not response correctly in
    documentations.
Revision: 117060
Author: h.corradabravo
Date: 2016-05-03T12:20:29+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizr/DESCRIPTION
update author list

From: Hector Corrada Bravo <hcorrada@gmail.com>
Revision: 117059
Author: h.corradabravo
Date: 2016-05-03T12:20:23+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizr/R/EpivizChartMgr-class.R
refactor code to get chart from app id

From: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Revision: 117058
Author: h.corradabravo
Date: 2016-05-03T12:20:18+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizr/R/EpivizChartMgr-class.R
rename variable fix

From: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Revision: 117057
Author: h.corradabravo
Date: 2016-05-03T12:20:13+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizr/R/startEpiviz.R
rename getChartSettings to setChartSettings

From: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Revision: 117056
Author: h.corradabravo
Date: 2016-05-03T12:20:08+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizr/R/EpivizChart-class.R
Modified  /trunk/madman/Rpacks/epivizr/R/EpivizChartMgr-class.R
fix chart set settings

From: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Revision: 117055
Author: h.corradabravo
Date: 2016-05-03T12:20:02+00:00
Paths:
Modified  /trunk/madman/Rpacks/epivizr/R/EpivizChart-class.R
Modified  /trunk/madman/Rpacks/epivizr/R/EpivizChartMgr-class.R
Modified  /trunk/madman/Rpacks/epivizr/R/startEpiviz.R
update chart settings from epiviz

From: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Revision: 117054
Author: k.mezhoud
Date: 2016-05-03T12:10:10+00:00
Paths:
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/NEWS
Modified  /trunk/madman/Rpacks/canceR/vignettes/canceR.Rnw
rm usepackage vi4

From: kmezhoud <kmezhoud@gmail.com>
Revision: 117052
Author: v.kiselev
Date: 2016-05-03T10:43:13+00:00
Paths:
Modified  /trunk/madman/Rpacks/SC3/DESCRIPTION
Modified  /trunk/madman/Rpacks/SC3/R/sc3.R
Modified  /trunk/madman/Rpacks/SC3/R/shiny.R
Modified  /trunk/madman/Rpacks/SC3/man/sc3.Rd
move outlier threshold to the interactive session; remove some unused variables
Revision: 117051
Author: h.corradabravo
Date: 2016-05-03T10:22:22+00:00
Paths:
Added  /trunk/madman/Rpacks/epivizrStandalone/.Rbuildignore
Added  /trunk/madman/Rpacks/epivizrStandalone/.gitignore
Modified  /trunk/madman/Rpacks/epivizrStandalone/DESCRIPTION
Modified  /trunk/madman/Rpacks/epivizrStandalone/NAMESPACE
Modified  /trunk/madman/Rpacks/epivizrStandalone/R/setStandalone.R
Modified  /trunk/madman/Rpacks/epivizrStandalone/R/startStandalone.R
Modified  /trunk/madman/Rpacks/epivizrStandalone/R/zzz.R
Added  /trunk/madman/Rpacks/epivizrStandalone/epivizrStandalone.Rproj
Modified  /trunk/madman/Rpacks/epivizrStandalone/tests/testthat/test-startStandalone.R
Modified  /trunk/madman/Rpacks/epivizrStandalone/vignettes/EpivizrStandalone.Rmd
Changes after bioc submission

* uses 'min' branch on epiviz repo by default
* point to proper index file 'epivizr-index.html' or 'index-standalone.html' depending on index
* fix namespace issues to avoid error in tests
* add update_remotes.sh to ignore dotfiles
* 0.99.1 version bump
* add Rstudio project file
* cleanup merge after bioc acceptance
* skip tests due to gc error
* circumvent annotationdbi error in vignette (momentarily)

From: Hector Corrada Bravo <hcorrada@gmail.com>
Revision: 117048
Author: hpages
Date: 2016-05-03T07:34:19+00:00
Paths:
Modified  /trunk/madman/Rpacks/S4Vectors/NEWS
update NEWS file
Revision: 117047
Author: hpages
Date: 2016-05-03T06:36:53+00:00
Paths:
Modified  /trunk/madman/Rpacks/IRanges/NEWS
update NEWS file
Revision: 117046
Author: jq.sun
Date: 2016-05-03T06:08:49+00:00
Paths:
Modified  /trunk/madman/Rpacks/TCC/DESCRIPTION
Modified  /trunk/madman/Rpacks/TCC/NAMESPACE
Modified  /trunk/madman/Rpacks/TCC/man/TCC-class.Rd
fix warnings
Revision: 117045
Author: hpages
Date: 2016-05-03T05:37:28+00:00
Paths:
Modified  /trunk/madman/Rpacks/IRanges/NAMESPACE
Modified  /trunk/madman/Rpacks/IRanges/R/AtomicList-utils.R
The "which.min" and "which.max" methods for NumericalList objects are back to
returning an integer vector, like they did in BioC <= 3.2 (the benefits of
returning a LocalSubscript object is not clear, needs further discussion, and
would at least need to be documented).
Revision: 117044
Author: hpages
Date: 2016-05-03T04:37:46+00:00
Paths:
Modified  /trunk/madman/Rpacks/IRanges/R/setops-methods.R
Rename "pintersect" method for CompressedAtomicList objects -> "intersect". See
svn commit message for commit 113793 in GenomicRanges for why "pintersect" is a
misnomer for such method.
Revision: 117043
Author: hpages
Date: 2016-05-03T04:23:11+00:00
Paths:
Modified  /trunk/madman/Rpacks/IRanges/man/extractList.Rd
a couple of minor edits
Revision: 117042
Author: x.zheng
Date: 2016-05-03T04:13:56+00:00
Paths:
Modified  /trunk/madman/Rpacks/SeqArray/src/ConvGDS2VCF.cpp
minor adjustment for VCF output
Revision: 117041
Author: c.lareau
Date: 2016-05-03T03:58:11+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Version bump
Revision: 117040
Author: m.riester
Date: 2016-05-03T02:18:24+00:00
Paths:
Modified  /trunk/madman/Rpacks/PureCN/vignettes/PureCN.Rnw
More minor vignette improvements
Revision: 117039
Author: x.zheng
Date: 2016-05-03T01:54:48+00:00
Paths:
Modified  /trunk/madman/Rpacks/gdsfmt/DESCRIPTION
Modified  /trunk/madman/Rpacks/gdsfmt/NEWS
Modified  /trunk/madman/Rpacks/gdsfmt/R/gdsfmt-main.r
Modified  /trunk/madman/Rpacks/gdsfmt/README.md
Modified  /trunk/madman/Rpacks/gdsfmt/inst/include/CoreDEF.h
Modified  /trunk/madman/Rpacks/gdsfmt/inst/unitTests/include.r
Modified  /trunk/madman/Rpacks/gdsfmt/inst/unitTests/test_01_datatype.R
Modified  /trunk/madman/Rpacks/gdsfmt/inst/unitTests/valid/standard.RData
Modified  /trunk/madman/Rpacks/gdsfmt/man/add.gdsn.Rd
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/CoreArray.cpp
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dAllocator.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBase.cpp
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBase.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBitGDS.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBitGDS_Bit1.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBitGDS_Bit2.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBitGDS_Bit24.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dBitGDS_Bit4.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dRealGDS.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dSerial.cpp
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dSerial.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/CoreArray/dStrGDS.h
Modified  /trunk/madman/Rpacks/gdsfmt/src/gdsfmt.cpp
Modified  /trunk/madman/Rpacks/gdsfmt/vignettes/gdsfmt_vignette.Rmd
faster implementation of variable-length string
Revision: 117038
Author: c.lareau
Date: 2016-05-03T01:10:39+00:00
Paths:
Added  /trunk/madman/Rpacks/diffloop/.Rbuildignore
Added  /trunk/madman/Rpacks/diffloop/.gitignore
Added .Rbuildignore

From: Martin Aryee <martin.aryee@gmail.com>
Revision: 117037
Author: mtmorgan
Date: 2016-05-03T00:55:34+00:00
Paths:
Modified  /trunk/madman/Rpacks/OrganismDbi/R/createOrganismPackage.R
minor code clean-up

- avoid library() with nmspc = loadNamespace(), get(..., nmspc)
Revision: 117036
Author: hpages
Date: 2016-05-03T00:46:59+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicRanges/NEWS
update NEWS file
Revision: 117035
Author: d.tenenbaum
Date: 2016-05-02T22:54:38+00:00
Paths:
Modified  /trunk/madman/Rpacks/bioc_3.3.manifest
Modified  /trunk/madman/Rpacks/bioc_3.4.manifest
remove EpiCluster at maintainer's request
Revision: 117034
Author: d.tenenbaum
Date: 2016-05-02T22:53:44+00:00
Paths:
Deleted  /trunk/madman/Rpacks/EpiCluster

    
Revision: 117033
Author: l.gatto
Date: 2016-05-02T22:51:09+00:00
Paths:
Modified  /trunk/madman/Rpacks/MSnbase/DESCRIPTION
Modified  /trunk/madman/Rpacks/MSnbase/NEWS
Modified  /trunk/madman/Rpacks/MSnbase/R/functions-mzR.R
Modified  /trunk/madman/Rpacks/MSnbase/R/readMSData.R
Modified  /trunk/madman/Rpacks/MSnbase/R/readMSnSet.R
Modified  /trunk/madman/Rpacks/MSnbase/tests/testthat/test_MzTab.R
Modified  /trunk/madman/Rpacks/MSnbase/tests/testthat/test_defunct.R
Modified  /trunk/madman/Rpacks/MSnbase/tests/testthat/test_io.R
Modified  /trunk/madman/Rpacks/MSnbase/tests/testthat/test_mzR-funs.R
Merge branch 'master' into devel

* master:
  fix defunct test
  readMSnSet2 unit test
  add defunct test
  fix typo
  mzR funs unit tests
  new gh devel version

From: Laurent <lg390@cam.ac.uk>
Revision: 117032
Author: mtmorgan
Date: 2016-05-02T22:18:36+00:00
Paths:
Modified  /trunk/madman/Rpacks/BiocInstaller/DESCRIPTION
Modified  /trunk/madman/Rpacks/BiocInstaller/R/zzz.R
Added  /trunk/madman/Rpacks/BiocInstaller/inst/scripts/BiocInstaller.dcf
more robust initialization

- don't sink() message to avoid interfering with R CMD check
- allow for off-line BiocInstaller
Revision: 117031
Author: m.lawrence
Date: 2016-05-02T21:54:07+00:00
Paths:
Modified  /trunk/madman/Rpacks/rtracklayer/configure
Modified  /trunk/madman/Rpacks/rtracklayer/configure.ac
Modified  /trunk/madman/Rpacks/rtracklayer/src/Makevars
Added  /trunk/madman/Rpacks/rtracklayer/src/Makevars.common
Deleted  /trunk/madman/Rpacks/rtracklayer/src/Makevars.common.in
Added  /trunk/madman/Rpacks/rtracklayer/src/Makevars.in
configure Makevars, not Makevars.common, since Windows cannot configure
Revision: 117030
Author: hpages
Date: 2016-05-02T21:41:35+00:00
Paths:
Modified  /trunk/madman/Rpacks/GenomicAlignments/NEWS
update NEWS file
Revision: 117029
Author: d.tenenbaum
Date: 2016-05-02T21:39:02+00:00
Paths:
Modified  /trunk/madman/Rpacks/flowClean/DESCRIPTION
fix invalid version number
Revision: 117028
Author: d.tenenbaum
Date: 2016-05-02T21:35:19+00:00
Paths:
Modified  /trunk/madman/Rpacks/canceR/DESCRIPTION
Modified  /trunk/madman/Rpacks/canceR/R/canceR_pdf.R
for real, only open vignette if interactive
Revision: 117027
Author: hpages
Date: 2016-05-02T21:23:39+00:00
Paths:
Modified  /trunk/madman/Rpacks/SummarizedExperiment/NEWS
update NEWS file
Revision: 117026
Author: hpages
Date: 2016-05-02T21:14:58+00:00
Paths:
Modified  /trunk/madman/Rpacks/SummarizedExperiment/R/RangedSummarizedExperiment-class.R
base::order() got a new argument ('method') in R 3.3 thus so does the "order"
method for RangedSummarizedExperiment objects.
Revision: 117025
Author: s.manimaran
Date: 2016-05-02T21:00:52+00:00
Paths:
Modified  /trunk/madman/Rpacks/BatchQC/DESCRIPTION
Modified  /trunk/madman/Rpacks/BatchQC/inst/shiny/BatchQC/server.R
Fixing the tooltip for the Differential Expression box plot and also the header for the LIMMA table
Revision: 117024
Author: l.goldstein
Date: 2016-05-02T20:42:34+00:00
Paths:
Modified  /trunk/madman/Rpacks/SGSeq/DESCRIPTION
Modified  /trunk/madman/Rpacks/SGSeq/vignettes/SGSeq.Rmd
minor changes in DESCRIPTION and vignette
Revision: 117023
Author: c.lareau
Date: 2016-05-02T20:36:30+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Modified  /trunk/madman/Rpacks/diffloop/R/core.R
Modified  /trunk/madman/Rpacks/diffloop/man/annotateLoops.Rd
fixed row.names when subsetting the data.frame

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117022
Author: c.lareau
Date: 2016-05-02T20:36:24+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/R/diffloop-class.R
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Version anti-bumb? to 0.99.9

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117021
Author: c.lareau
Date: 2016-05-02T20:36:19+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/R/core.R
Modified  /trunk/madman/Rpacks/diffloop/R/loopFunctions.R
v1.0.0 bump

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117020
Author: c.lareau
Date: 2016-05-02T20:36:13+00:00
Paths:
Deleted  /trunk/madman/Rpacks/diffloop/vignettes/diffloop.html
removed compiled vigntette

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117019
Author: c.lareau
Date: 2016-05-02T20:36:08+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/NAMESPACE
Modified  /trunk/madman/Rpacks/diffloop/R/colData.R
Modified  /trunk/madman/Rpacks/diffloop/R/core.R
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Added  /trunk/madman/Rpacks/diffloop/man/splitSamples.Rd
Added  /trunk/madman/Rpacks/diffloop/vignettes/diffloop.html
added splitSamples function; optimized subsetRegion

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117018
Author: c.lareau
Date: 2016-05-02T20:35:59+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/data.R
Modified  /trunk/madman/Rpacks/diffloop/R/loopFunctions.R
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Added  /trunk/madman/Rpacks/diffloop/inst/rda/geneinfo.h.rda
Added  /trunk/madman/Rpacks/diffloop/inst/rda/geneinfo.m.rda
Added  /trunk/madman/Rpacks/diffloop/man/geneinfo.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopPlot.Rd
cache Plotting annotation

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117017
Author: c.lareau
Date: 2016-05-02T20:35:50+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Modified  /trunk/madman/Rpacks/diffloop/man/getHumanTSS.Rd
fixed docu warning

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117015
Author: c.lareau
Date: 2016-05-02T20:35:33+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/core.R
Modified  /trunk/madman/Rpacks/diffloop/R/data.R
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Modified  /trunk/madman/Rpacks/diffloop/README.md
fine tuned docu

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117013
Author: c.lareau
Date: 2016-05-02T20:35:20+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/NAMESPACE
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Modified  /trunk/madman/Rpacks/diffloop/R/assoc.R
Modified  /trunk/madman/Rpacks/diffloop/R/colData.R
Modified  /trunk/madman/Rpacks/diffloop/R/core.R
Modified  /trunk/madman/Rpacks/diffloop/R/data.R
Modified  /trunk/madman/Rpacks/diffloop/R/diffloop-class.R
Modified  /trunk/madman/Rpacks/diffloop/R/diffloop.R
Modified  /trunk/madman/Rpacks/diffloop/R/loopFunctions.R
Modified  /trunk/madman/Rpacks/diffloop/R/pipeline_io.R
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Modified  /trunk/madman/Rpacks/diffloop/R/union.R
Deleted  /trunk/madman/Rpacks/diffloop/inst/rda/jpn_chr1reg.rda
Added  /trunk/madman/Rpacks/diffloop/inst/rda/loops.small.rda
Modified  /trunk/madman/Rpacks/diffloop/man/addchr.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/annotateAnchors.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/annotateLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/calcLDSizeFactors.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/diffloop.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/dim-loopdata-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/dim-loops-method.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/dim-looptest-method.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/featureTest.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/filterLoops.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/head-loopdata-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/head-loops-method.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/head-looptest-method.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/interchromosomal.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/intrachromosomal.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/jpn_chr1reg.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopFit.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopGenes.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopMetrics.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopPlot.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopTest.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopWidth.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/loopdata-class.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/loopdataMake.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/loopdataSubset.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopfit-class.Rd
Added  /trunk/madman/Rpacks/diffloop/man/loops-class.Rd
Added  /trunk/madman/Rpacks/diffloop/man/loops.small.Rd
Added  /trunk/madman/Rpacks/diffloop/man/loopsMake.Rd
Added  /trunk/madman/Rpacks/diffloop/man/loopsSubset.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/looptest-class.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/mergeAnchors.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/numAnchors.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/numLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/pcaPlot.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/plotTopLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/quickAssoc.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/removeSelfLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/rmchr.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/sampleNames-loopdata-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/sampleNames-loops-method.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/slidingWindowTest.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/sub-loopdata-numeric-numeric-missing-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/sub-loops-numeric-numeric-missing-method.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/sub-looptest-numeric-missing-missing-method.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/subsetLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/subsetRegion.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/summary-loopdata-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/summary-loops-method.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/tail-loopdata-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/tail-loops-method.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/tail-looptest-method.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/topLoops.Rd
Deleted  /trunk/madman/Rpacks/diffloop/man/union-loopdata-loopdata-method.Rd
Added  /trunk/madman/Rpacks/diffloop/man/union-loops-loops-method.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/updateLDGroups.Rd
Modified  /trunk/madman/Rpacks/diffloop/vignettes/diffloop.Rmd
collated loopdata and looptest objects and functionality

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117012
Author: c.lareau
Date: 2016-05-02T20:35:03+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Modified  /trunk/madman/Rpacks/diffloop/man/annotateLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/plotTopLoops.Rd
Speedup some examples

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117011
Author: c.lareau
Date: 2016-05-02T20:34:57+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Modified  /trunk/madman/Rpacks/diffloop/man/annotateLoops.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/loopPlot.Rd
Modified  /trunk/madman/Rpacks/diffloop/man/padGRanges.Rd
Modified  /trunk/madman/Rpacks/diffloop/vignettes/diffloop.Rmd
Accessing archieved version of biomaRt for stability

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117010
Author: c.lareau
Date: 2016-05-02T20:34:51+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Fixed execution error

From: Caleb Lareau <caleblareau@g.harvard.edu>
Revision: 117009
Author: c.lareau
Date: 2016-05-02T20:34:45+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Blue -> CTCF; Black -> none for colorLoops plotting

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117008
Author: c.lareau
Date: 2016-05-02T20:34:40+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Modified  /trunk/madman/Rpacks/diffloop/R/loopFunctions.R
Modified  /trunk/madman/Rpacks/diffloop/man/annotateLoops.Rd
Completed the visualize top loops pipeline with biological annotation

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117007
Author: c.lareau
Date: 2016-05-02T20:34:34+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/NAMESPACE
Modified  /trunk/madman/Rpacks/diffloop/R/annotation.R
Added  /trunk/madman/Rpacks/diffloop/man/getHumanTSS.Rd
Added innate functionality to grab transcription start sites

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117006
Author: c.lareau
Date: 2016-05-02T20:34:28+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/DESCRIPTION
Modified  /trunk/madman/Rpacks/diffloop/inst/NEWS.Rd
Version bump

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117003
Author: c.lareau
Date: 2016-05-02T20:34:08+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Modified  /trunk/madman/Rpacks/diffloop/man/plotTopLoops.Rd
formatR code

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>
Revision: 117002
Author: c.lareau
Date: 2016-05-02T20:34:02+00:00
Paths:
Modified  /trunk/madman/Rpacks/diffloop/NAMESPACE
Modified  /trunk/madman/Rpacks/diffloop/R/core.R
Modified  /trunk/madman/Rpacks/diffloop/R/plotting.R
Modified  /trunk/madman/Rpacks/diffloop/R/sugar.R
Added  /trunk/madman/Rpacks/diffloop/man/padGRanges.Rd
Added  /trunk/madman/Rpacks/diffloop/man/plotTopLoops.Rd
Implemented new functions  and

From: Caleb Lareau <lareauc@Calebs-MacBook-Pro.local>

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