To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

In most cases, you don't need to download the package archive at all.

MMDiffBamSubset

 

Example ChIP-Seq data for the MMDiff package

Bioconductor version: Release (3.1)

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

Documentation

PDF   Reference Manual

Details

biocViews ArrayExpress, ChIPSeqData, DNASeqData, ExperimentData, Genome, Mus_musculus_Data, StemCell
Version 1.4.0
License LGPL
Depends
Imports
LinkingTo
Suggests MMDiff
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me MMDiff
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MMDiffBamSubset_1.4.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Package Short Url http://bioconductor.org/packages/MMDiffBamSubset/
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