To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

In most cases, you don't need to download the package archive at all.

MMDiffBamSubset

Example ChIP-Seq data for the MMDiff package

Bioconductor version: Release (3.0)

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Citation (from within R, enter citation("MMDiffBamSubset")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

Documentation

PDF   Reference Manual

Details

biocViews ChIPseqData, ExperimentData
Version 1.1.1
License LGPL
Depends
Imports
Suggests MMDiff
System Requirements
URL
Depends On Me
Imports Me
Suggests Me MMDiff

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source MMDiffBamSubset_1.1.1.tar.gz
Windows Binary MMDiffBamSubset_1.1.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) MMDiffBamSubset_1.1.1.tgz
Mac OS X 10.9 (Mavericks) MMDiffBamSubset_1.1.1.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center