procoil

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: Release (2.14)

The procoil package allows to predict whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. The predict function not only computes the prediction itself, but also a profile which allows to determine the strengths to which the individual residues are indicative for either class. Profiles can also be plotted and exported to files.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("procoil")

To cite this package in a publication, start R and enter:

    citation("procoil")

Documentation

PDF R Script PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Proteomics, Software
Version 1.14.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL (>= 2)
Depends R (>= 2.12.0)
Imports methods, stats, graphics
Suggests Biostrings
System Requirements
URL http://www.bioinf.jku.at/software/procoil/ https://github.com/UBod/procoil
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Package Downloads

Package Source procoil_1.14.0.tar.gz
Windows Binary procoil_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) procoil_1.14.0.tgz
Mac OS X 10.9 (Mavericks)
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