To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("procoil")

In most cases, you don't need to download the package archive at all.

procoil

 

   

This is the development version of procoil; for the stable release version, see procoil.

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: Development (3.4)

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

Citation (from within R, enter citation("procoil")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("procoil")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("procoil")

 

PDF R Script PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins
PDF   Reference Manual
Text   NEWS

Details

biocViews Classification, Proteomics, Software, SupportVectorMachine
Version 2.1.2
In Bioconductor since BioC 2.8 (R-2.13) (5 years)
License GPL (>= 2)
Depends R (>= 3.3.0), kebabs
Imports methods, stats, graphics, S4Vectors, Biostrings, utils
LinkingTo
Suggests knitr
SystemRequirements
Enhances
URL http://www.bioinf.jku.at/software/procoil/
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source procoil_2.1.2.tar.gz
Windows Binary procoil_2.1.2.zip
Mac OS X 10.9 (Mavericks) procoil_2.1.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/procoil
Package Short Url http://bioconductor.org/packages/procoil/
Package Downloads Report Download Stats

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