FARMS - Factor Analysis for Robust Microarray Summarization

Bioconductor version: Release (2.14)

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at>

Maintainer: Djork-Arne Clevert <okko at>

To install this package, start R and enter:


Citation (from within R, enter citation("farms")):


PDF R Script Using farms
PDF   Reference Manual


biocViews GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version 1.16.0
In Bioconductor since BioC 2.7 (R-2.12)
License LGPL (>= 2.1)
Depends R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports affy, MASS, Biobase(>= 1.13.41), methods, graphics
Suggests affydata, Biobase, utils
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source farms_1.16.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) farms_1.16.0.tgz
Mac OS X 10.9 (Mavericks) farms_1.16.0.tgz
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